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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00034307-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 295aa MW: 33001.9 Da PI: 5.2335 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 48.5 | 2e-15 | 24 | 67 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T+eE+ +++++ lG++ W++Ia+ ++ gRt++++k++w +
PSME_00034307-RA 24 RGSFTEEEERTIIQLHGILGNR-WSAIASQLP-GRTDNEIKNFWST 67
89********************.*********.***********65 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50090 | 4.391 | 1 | 18 | IPR017877 | Myb-like domain |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 5 | 31 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 4.06E-21 | 5 | 77 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 25.151 | 19 | 73 | IPR017930 | Myb domain |
| SMART | SM00717 | 2.1E-15 | 23 | 71 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 3.1E-14 | 24 | 67 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 6.37E-11 | 26 | 65 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 32 | 70 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 295 aa Download sequence Send to blast |
MGLLRCGKSC RLRWTNYLRP DIKRGSFTEE EERTIIQLHG ILGNRWSAIA SQLPGRTDNE 60 IKNFWSTRLK KRLLKMGLDP ATHAPRGEVN PTAGPEGLEA LALTRHKAQW ENARLEAEAR 120 LSRESLLMSS SNTITTPASN NPAPCTDYFL KLWNSEAGKA FRNEETHHPN RGGDNSEIPV 180 MCCASTGQNS CDQLLNPNDK DKHNGSQLEC GDCNVKIGGV LSCFGDMATG KMEDKTTEEL 240 DFPELLLDFP DNDDMNSNIQ SELITAFQQK PASPWPQLHD QDFWSNLSFI DHDSA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 1e-21 | 5 | 73 | 40 | 108 | B-MYB |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027927284.1 | 2e-74 | transcription factor MYB41-like | ||||
| TrEMBL | A0A222UAM7 | 6e-77 | A0A222UAM7_GINBI; R2R3MYB15 | ||||
| STRING | XP_007139892.1 | 3e-71 | (Phaseolus vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G61250.1 | 2e-59 | myb domain protein 17 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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