PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034216-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 522aa    MW: 60192.4 Da    PI: 6.5189
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034216-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92e-21173252286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       Wt++e+l+Li++r+e+e r+ +g +k  lW+e++++++  ++ r ++qC++kwe+l+  yk +++g ++r  e     p+f++l+
  PSME_00034216-RA 173 WTRSETLKLIRLRTELEPRFAKGGRKSELWDEIAEALQNDQICRDAQQCRDKWEKLAAGYKGVRDGVRDR--E---DNPFFEELH 252
                       ********************************************************************96..3...458999986 PP
2trihelix66.17.6e-21432511286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++ evl+Li++r em++r+ ++ +++ lW+e +++++++g++r +kqC+ekw++l   yk + + +k+   +     py+ +l+
  PSME_00034216-RA 432 WKRAEVLQLIKIRGEMDSRFLESTRRGLLWDELAERLMAQGIKRDAKQCREKWDKLTAGYKDVVDDKKEA--NL---SPYYAELT 511
                       ******************************************************************9984..33...47888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.374165229IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-5168228IPR009057Homeodomain-like
SMARTSM007170.002169231IPR001005SANT/Myb domain
PfamPF138374.1E-18171253No hitNo description
CDDcd122037.89E-24171236No hitNo description
PROSITE profilePS500907.271424488IPR017877Myb-like domain
SMARTSM007172.4428490IPR001005SANT/Myb domain
PfamPF138372.1E-16430512No hitNo description
CDDcd122033.08E-24430494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MYSPQSPFSS LNHPSISSQP FHIPISSSSQ TPLHHHHHLH IPISHSHPHS QPSLTHPNSL  60
TFQQPLYHSP EVQISQLHQV PEICEPCSIS QPLCDIPSLC DQVQPVQYAI SEAVSHPDST  120
YSTQNSSNPD VKGLENDRLG MVEVEEEGDG DDYKKKEKEK EKEKEHKKRS KNWTRSETLK  180
LIRLRTELEP RFAKGGRKSE LWDEIAEALQ NDQICRDAQQ CRDKWEKLAA GYKGVRDGVR  240
DREDNPFFEE LHPLLSGKGS RRERGDKDHL EVPEVELPKG LLCETGRDSV ISETEINTEK  300
RSCDFRDEEE WEVEVVASKG KKRRRPRYVS VSDLSAVKDL IETVIEKQQE FFKDLLETVE  360
RKEQMREQAR QEKEEKWRAE ERAERDMFNN AMMTLTQKLV GEGVGKFTAG ASVFQTSSMD  420
GNQALKKRSR NWKRAEVLQL IKIRGEMDSR FLESTRRGLL WDELAERLMA QGIKRDAKQC  480
REKWDKLTAG YKDVVDDKKE ANLSPYYAEL TAILGRQNVN SQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153168KKKEKEKEKEKEHKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.11e-145trihelix transcription factor GTL1-like
TrEMBLA0A176VSF21e-147A0A176VSF2_MARPO; Uncharacterized protein
TrEMBLA0A2R6WAH21e-149A0A2R6WAH2_MARPO; Uncharacterized protein
STRINGPP1S224_109V6.11e-144(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-13Trihelix family protein