PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00033943-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 132aa MW: 14687.3 Da PI: 8.5401 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w+++l PSME_00033943-RA 1 WSLIAGRLP-GRTDNDIKNYWNSHL 24 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 9.23E-7 | 1 | 24 | No hit | No description |
Pfam | PF00249 | 1.9E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.73E-7 | 1 | 30 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-12 | 1 | 25 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.587 | 1 | 28 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
WSLIAGRLPG RTDNDIKNYW NSHLKRKLIG MGIDPLTHRA FQKNSHHNPS APGNVRAPQT 60 ERWQGIVQDF FSCPSKLGVK SEQISDATSV QLEPDEHSSH LNLNLELSIT RSSIQAAGKE 120 VFNSEQGERG SS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117170 | 7e-79 | BT117170.1 Picea glauca clone GQ03814_D21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315890.3 | 2e-22 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-19 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NTK0 | 4e-51 | A9NTK0_PICSI; Uncharacterized protein | ||||
STRING | POPTR_0010s12420.1 | 4e-23 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-20 | myb domain protein 4 |