PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033810-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 247aa    MW: 27359.1 Da    PI: 7.8602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033810-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08120144226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt++C+ f+    C+yGd+C+F H+
  PSME_00033810-RA 120 KTRNCNKFYTDEGCPYGDTCNFVHD 144
                       8***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.04E-55891IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6716087IPR000571Zinc finger, CCCH-type
SMARTSM003560.386086IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-106093IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7117146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-9117145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.667118146IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5120144IPR000571Zinc finger, CCCH-type
SMARTSM003560.74120145IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MKKSKNGHGD IQGNGSRGRS HYQGELAQGP SSWDSTPSNG SVNEVSSSGG GKSNGTGWMF  60
FKTKICCKFR AGTCPYNSNY NFSHGMEELR KPPPNWKQIV SAQEEDRAHR TGSDSQRFHK  120
TRNCNKFYTD EGCPYGDTCN FVHDDQSQSR EYEMEMEPRM GAMEEINNFK DLQIGKPVSV  180
TNGKQQVTTH LETSAILLMK YGGGFLDGEN RGIPGGLWND SKQSGTFPKA HMDVGSRPSS  240
SVYNTDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1143911e-104BT114391.1 Picea glauca clone GQ03513_L14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84UQ33e-40C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-36C3H family protein