PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033676-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 817aa    MW: 88395 Da    PI: 7.8858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033676-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07724773147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  PSME_00033676-RA 724 RRPFSVAEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 773
                       6789999*******************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.51E-8506597IPR029071Ubiquitin-related domain
PROSITE profilePS500539.591511581IPR000626Ubiquitin domain
PROSITE profilePS5129416.112719778IPR017930Myb domain
SMARTSM007177.0E-7723776IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10724774IPR009057Homeodomain-like
CDDcd116603.68E-17725775No hitNo description
SuperFamilySSF466891.88E-14725805IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MDSRKRMDYG FLGYQAPPLP RAMRSARGRG SGYRKKDDYD SGMVSFELLA TVAGDLLQQQ  60
ENQKSGSERQ GIKSFEISNE VTGNGPREEE NCAEQALLEL EKSHIYPFED AVQRHGSSSQ  120
GTKLEPDDQG SSDENAIVLV ASHRKLALEV SCIKESPDMI IQSASRSVSS ISKSACLGQS  180
SNHNQKGVEI HANTQAKDAK EMPCISPGKT GEKEGCDIEK EVYSTNTCKE SFLTEQRLLG  240
SGHGIPESGA GLTKDALGVV ENSEGKGENE IDESNLGRWK RGHRVCENME DDLMLDAHSL  300
PASSGVSEEA TLDVDMKPPP LVSSGSSGPA HPCAGSKPDS YFCCPNTSTK VCRDDDDNSS  360
GCTTPTKVIK NSFKTYYQRG ANLRRAITSK FRKAVSSSSR KRKRSDIDIM ANADNMLKSE  420
TPGCGGSYTR QRTVRCSPSK RRRLAEEILI PTSDGHASTA SAGLDSNGED GEPPASAAKI  480
RRAKSASVSS SPTSAAGSSK HSSKKSSESH VKLTIKSFTV PELFIDMPES ATVANLKRTV  540
MEAAMNLLGD GLRVCVLLQG KKVSDESYTL DQLGIAHGGK LDSVGFMLEP NPMPTSQACA  600
EDPLFLLSRA VTQPSPRYPT GSASGQTITA EGNKSVMKSR SNKINGTAGA EVAVQIAGRA  660
QTETNQCAKS EYEEINDLPQ MQAGSNPGAL IVHPIVGPET AQGLALVPLN HKSRGSEIGK  720
RRIRRPFSVA EVEALVHAVE KLGTGRWRDV KLRAFEQAKH RTYVDLKDKW KTLVHTAKIA  780
PHQRRGEPVP QDLLDRVIHA HNYWTDQQAK QQAEVCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-537088141107Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439443KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1109020.0BT110902.1 Picea glauca clone GQ03229_J03 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-69TRF-like 2