PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033607-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 540aa    MW: 60018.7 Da    PI: 5.7813
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033607-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like551.8e-17353395245
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                        +++Wt +LH+rFv+aveqL G ++A+P++ilelmk +gLt+++
  PSME_00033607-RA 353 LKVEWTVDLHRRFVQAVEQL-GVDQAIPSRILELMKEDGLTRHN 395
                       5899****************.********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.7E-43392No hitNo description
SuperFamilySSF521726.18E-53394IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.601.3E-15350395IPR009057Homeodomain-like
SuperFamilySSF466896.09E-8350395IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-15352395IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MRLGSSAVGL KKKQGIILEV EKRITSLLLD FPKGLRVLVL DEDIEAAAET KSRLEGFEYV  60
VSTFSNETEA LAVVANETNS FHVALVEVST ESLKAIKATI LFMLHLGLEL ANVKSAQNGD  120
SSNGSKTEAG AIHEVQSCTP IPTDSVKQDT SIEPCNSEKF PAPSTPQLEQ GGRSPSQEDK  180
TLRLDDTTNF NAGTMHANNN CEYETIRELR LDAEATLAWS SQVYSPASVK KENQDMYRIS  240
LKTRNSSQCG LKYVDITSDQ LGNEIASRVT SLHSRFETVD VQVVNSLGIV EEEVGSAEGS  300
KSDDENIEKE ATFYSYACNE ENVYSSTKYI KGKKNNIEHD CKKSNIASSK KKLKVEWTVD  360
LHRRFVQAVE QLGVDQAIPS RILELMKEDG LTRHNHFDLA WTRTKQDKAW SRKGNLAAGP  420
ILGYSLVQLH PTPQGAPLGQ PLHVLGHPTI DQSRSHMWQQ IPMGSPTTWQ AQDGSFWKHP  480
RVCLDAWGFP TLGMPFYPQP MTPKEVIDEY FKETLNNPWT PLPLGLKPPS MEGVMAELQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078841e-89BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.62e-31ARR-B family protein