PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00032991-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 347aa MW: 38737.8 Da PI: 6.0506

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00032991-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	7e-14	3	46	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l+++++ lG++ W+ Ia +++ gRt++++k+ w++ PSME_00032991-RA 3 RGTFSPQEESLIIELHGVLGNR-WSQIATHLP-GRTDNEIKNLWNS 46 899*****************.*****.*******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.971	1	52	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-20	1	52	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-12	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.87E-13	2	61	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-12	3	46	IPR001005	SANT/Myb domain
CDD	cd00167	9.34E-9	5	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
LKRGTFSPQE ESLIIELHGV LGNRWSQIAT HLPGRTDNEI KNLWNSCIKK KLRQRGIDPN 60 THRPLSEVNA EAEDNKNGSS NKKVETQVAM EESHVSAGNE FKHLNADTPN PKFFHVSVED 120 NSLFASDSQA MLHNGLMDSN NSTTTTTSTA SAANISLPKE FFLERFNSVI ATPTSVEPGF 180 NFINQTSPAQ GFTAEKDHKL IDNPVLWLRA RSVGFPTENL MPWPGQVCDK SVSDAFSDFS 240 SDRPGPCLSS LLYSERSLDQ DLLDNADTNC MNGTAQYWDN TENNNNNMRT SSTSSSCNSS 300 TANLEVNNGA VFGHFWGFGE RLDVRSPPKM SERLRYFWRK QRPNTLI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

LKRGTFSPQE ESLIIELHGV LGNRWSQIAT HLPGRTDNEI KNLWNSCIKK KLRQRGIDPN  60
THRPLSEVNA EAEDNKNGSS NKKVETQVAM EESHVSAGNE FKHLNADTPN PKFFHVSVED  120
NSLFASDSQA MLHNGLMDSN NSTTTTTSTA SAANISLPKE FFLERFNSVI ATPTSVEPGF  180
NFINQTSPAQ GFTAEKDHKL IDNPVLWLRA RSVGFPTENL MPWPGQVCDK SVSDAFSDFS  240
SDRPGPCLSS LLYSERSLDQ DLLDNADTNC MNGTAQYWDN TENNNNNMRT SSTSSSCNSS  300
TANLEVNNGA VFGHFWGFGE RLDVRSPPKM SERLRYFWRK QRPNTLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-12	1	52	57	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT108136	0.0	BT108136.1 Picea glauca clone GQ03117_E18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026437001.1	4e-38	transcription factor MYB61-like
TrEMBL	A5JYF2	1e-177	A5JYF2_PICGL; R2R3-MYB transcription factor MYB8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-36	myb domain protein 61