PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032589-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 217aa    MW: 24021.5 Da    PI: 7.5042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032589-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-18125175255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g++ AeIrdp+      r++lg+f taeeAa a+++a+ +++g
  PSME_00032589-RA 125 HYRGVRNRP-WGKFTAEIRDPTVK--GSRVWLGTFNTAEEAALAYDRAAFRIRG 175
                       69****777.**********9553..3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.22E-31125183No hitNo description
SuperFamilySSF541711.05E-22125184IPR016177DNA-binding domain
PfamPF008474.3E-12125175IPR001471AP2/ERF domain
SMARTSM003809.1E-37125189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-31125183IPR001471AP2/ERF domain
PROSITE profilePS5103223.42125183IPR001471AP2/ERF domain
PRINTSPR003678.2E-11126137IPR001471AP2/ERF domain
PRINTSPR003678.2E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNTNKLDFIR HRLLEVEDDP DIIDVDQDQP PRNPSFSFTH TASSSSTNYL TPTTAICSCQ  60
NSGSRNYVTP TTALCSCQNS SSKSTVEDID NEVIQQQQYS SSSSINPPQP QEEKNGEIKK  120
SEDMHYRGVR NRPWGKFTAE IRDPTVKGSR VWLGTFNTAE EAALAYDRAA FRIRGTRALV  180
NFPLALPHNS ESGSAVVHKR KRNSVAAGQW NAGLGGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-31125184261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179303.13e-32pathogenesis-related genes transcriptional activator PTI5
RefseqXP_025684330.13e-32pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A023ZYJ78e-53A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-24ethylene responsive element binding factor 6