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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00031699-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 284aa MW: 31609.7 Da PI: 4.8391 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 3 | 45 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rg ++++E l+++++ lG++ W Ia +++ gRt++++k+ w+
PSME_00031699-RA 3 RGTFSPQEKSLIIELHGVLGNR-WYQIATHLP-GRTDNEIKNLWN 45
899*******************.*********.*********998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 18.613 | 1 | 52 | IPR017930 | Myb domain |
| SMART | SM00717 | 6.7E-9 | 2 | 50 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 1.3E-11 | 2 | 52 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 5.0E-11 | 3 | 45 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 8.7E-18 | 4 | 48 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.11E-7 | 5 | 45 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 284 aa Download sequence Send to blast |
LKRGTFSPQE KSLIIELHGV LGNRWYQIAT HLPGRTDNEI KNLWNSPLNE VNAEAEDNKN 60 DNSNKKVETQ VAMDESHVSA GNEFKHLNAD TPNPKFFHVS IEDNSLFASD SQAMLHNGFM 120 NSNNSTTTTT STAIEPGFNF INQTSIAQGF TAEKDHKLID NPVLWVLQAL TRSVGFPTEN 180 LMPWPGQVSD KSVDVCDYNS IMVNPSMYRR GPCLSSLLYS ERSLDQDLLD NAGTNCMNGT 240 AQYWDNTENN NNNMRTSSRS SSCNSSTANL EVNNGTAFGH FWGF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | DQ399057 | 4e-73 | DQ399057.1 Pinus taeda R2R3-MYB transcription factor MYB8 mRNA, complete cds. | |||
| GenBank | EU482895 | 4e-73 | EU482895.1 Pinus pinaster R2R3-Myb8 transcription factor (Myb8) gene, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A5JYF2 | 1e-150 | A5JYF2_PICGL; R2R3-MYB transcription factor MYB8 | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G09540.1 | 1e-20 | myb domain protein 61 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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