PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031662-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 295aa MW: 33255.6 Da PI: 4.887 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 408.1 | 1.7e-125 | 72 | 288 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+p ++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00031662-RA 72 PPPPAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPRMRPVLRPGGIDLKDGPLFAALSAKTQEKVVGIPECEGAATAKSPWNAY 164 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkprr fesgnrkq slpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+a+yrle PSME_00031662-RA 165 ELFDMYVLEGESMREWLFFDKPRRDFESGNRKQCSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACAFYRLE 257 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00031662-RA 258 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 288 *****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
DFLVDDLHTP EKDFERQLPP NIVEGLEVTS GLEGGQINFH QDYIPAAQPI FTLTGEEETS 60 PVFNGPQPGL CPPPPAFLGP KCALWDCSRP AQGTKWCQDY CSDFHMTLAS NEGAPRMRPV 120 LRPGGIDLKD GPLFAALSAK TQEKVVGIPE CEGAATAKSP WNAYELFDMY VLEGESMREW 180 LFFDKPRRDF ESGNRKQCSL PDYSGRGWHE SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL 240 YEYEINDCDA CAFYRLELKM VCSKKNTKGK VGGDPLVDLQ HQLGKLSAEF SWVAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260370.1 | 1e-133 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-122 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1U8A0G4 | 1e-132 | A0A1U8A0G4_NELNU; transcription factor VOZ1 | ||||
STRING | XP_010260370.1 | 1e-132 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-115 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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