PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031406-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 341aa MW: 38543.6 Da PI: 6.111

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031406-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.2	1.5e-44	18	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 pGfrFhPt++elv +yLk+ v+gk +++ ++i+ +d+y++ePwdL ++++ + ke++fF++rd++ ++ r+nr+t+ gyWkatg+d++v++ PSME_00031406-RA 18 PGFRFHPTEQELVGFYLKRMVQGKLHNF-NFIPMLDLYRYEPWDLSSSASLDGKELFFFVPRDERCQNnRGRPNRMTSCGYWKATGSDRSVHD 109 9*********************9888.99**********977778999*****99986377****************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +glkktLvfy+grap+g kt+W+m+eyrl PSME_00031406-RA 110 DNAKCIGLKKTLVFYRGRAPHGLKTNWIMNEYRL 143 999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-50	13	162	IPR003441	NAC domain
PROSITE profile	PS51005	48.89	16	162	IPR003441	NAC domain
Pfam	PF02365	1.4E-24	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEMNVCKRAS NEKPCELPGF RFHPTEQELV GFYLKRMVQG KLHNFNFIPM LDLYRYEPWD 60 LSSSASLDGK ELFFFVPRDE RCQNNRGRPN RMTSCGYWKA TGSDRSVHDD NAKCIGLKKT 120 LVFYRGRAPH GLKTNWIMNE YRLPDYFHGP KKEVVLCRIY KKATPLKWLE QQAMIQAEDL 180 GCISHDSPPP AEIDDNKRNQ EAKSICVRKS DSVACHEITA ESSSSPYDKV AITSSLDRAV 240 DSGLMESTVS GTGNFIDPNL YSAFADDCKR VEGFSSIMAL LNSAPSPSSS SIECCWEIPA 300 MAEEPRSPTQ IPKLSIDFHN EEVSSDGNWN LWMELGSLPS I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-40	18	164	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-40	18	164	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-40	18	164	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-40	18	164	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	8e-40	18	164	22	170	NAC domain-containing protein 19
3swm_B	8e-40	18	164	22	170	NAC domain-containing protein 19
3swm_C	8e-40	18	164	22	170	NAC domain-containing protein 19
3swm_D	8e-40	18	164	22	170	NAC domain-containing protein 19
3swp_A	8e-40	18	164	22	170	NAC domain-containing protein 19
3swp_B	8e-40	18	164	22	170	NAC domain-containing protein 19
3swp_C	8e-40	18	164	22	170	NAC domain-containing protein 19
3swp_D	8e-40	18	164	22	170	NAC domain-containing protein 19
4dul_A	8e-40	18	164	19	167	NAC domain-containing protein 19
4dul_B	8e-40	18	164	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085463	1e-170	EF085463.1 Picea sitchensis clone WS0271_F01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344533.1	7e-63	uncharacterized protein LOC100501100
Refseq	XP_008791987.1	1e-63	NAC domain-containing protein 22-like
Swissprot	Q10S65	4e-62	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A9NVV7	1e-162	A9NVV7_PICSI; Uncharacterized protein
STRING	XP_008791987.1	6e-63	(Phoenix dactylifera)
STRING	GRMZM2G059428_P01	3e-62	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-61	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]