PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031048-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20634.7 Da PI: 5.2731 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 8.1e-12 | 56 | 145 | 16 | 97 |
EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 16 lvlpkkfaeeh............ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l +p++ + ++ +g ++ ++d +g sW++ y ++++r v+t GW+eF++++++k+gD+++ + +++ f +v+ PSME_00031048-RA 56 LLIPNREMVTNlyfqlmfmikylSG---SQGIAAFKDYDGFSWRIDWyAYLQYGRRLVFTIGWNEFASDHNVKDGDILLVEILNSEHF--KVQ 143 6677777777777777776644533...3346899***********946699*****************************7776777..887 PP EE CS B3 96 vf 97 +f PSME_00031048-RA 144 IF 145 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0054 | 43 | 148 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-9 | 57 | 145 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-13 | 65 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-12 | 66 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.96E-9 | 73 | 145 | No hit | No description |
PROSITE profile | PS50863 | 9.968 | 87 | 148 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
IYFYNGSNGK LESNMEIREQ VIWTGECWFF VDNETSMMGT KGIFKNRYKP HVGEGLLIPN 60 REMVTNLYFQ LMFMIKYLSG SQGIAAFKDY DGFSWRIDWY AYLQYGRRLV FTIGWNEFAS 120 DHNVKDGDIL LVEILNSEHF KVQIFLGEIC MDIKENKALG CTREVGFLEF FHYML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 8e-08 | B3 family protein |