PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030703-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 374aa    MW: 42061.3 Da    PI: 6.9771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030703-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l ++++++G g+W++ +++ g++R++k+c++rw++yl
  PSME_00030703-RA 14 RGAWTAEEDLILSKYIRLHGDGRWEKLPQKAGLKRCGKSCRLRWRNYL 61
                      89*********************************************7 PP
2Myb_DNA-binding50.64.4e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E+el+++ +++lG++ Wk+Ia +++ gRt++++k++w+++l
  PSME_00030703-RA  67 RGNISSDEEELIIRMHRLLGNR-WKLIAGRLP-GRTGNEIKNYWNSHL 112
                       78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.927961IPR017930Myb domain
SuperFamilySSF466891.03E-2611108IPR009057Homeodomain-like
SMARTSM007173.5E-141363IPR001005SANT/Myb domain
PfamPF002495.1E-161461IPR001005SANT/Myb domain
CDDcd001671.12E-111661No hitNo description
PROSITE profilePS5129424.48162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2265115IPR009057Homeodomain-like
SMARTSM007176.2E-1566114IPR001005SANT/Myb domain
PfamPF002495.1E-1467112IPR001005SANT/Myb domain
CDDcd001675.03E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRSPCCSKQ GLNRGAWTAE EDLILSKYIR LHGDGRWEKL PQKAGLKRCG KSCRLRWRNY  60
LTPDIKRGNI SSDEEELIIR MHRLLGNRWK LIAGRLPGRT GNEIKNYWNS HLSKSAQAQA  120
KKQNIKKRPK SPPPFQNPHV WKATPLKIKP NGSNGYGCSN IPTSDVSIEF SNIQETSNSG  180
YLLGNDSIIQ GDDSKRMGDV NLFQTEDRNS ACSSMYSLAE QQSPRSNDHF ARHEAIFDDT  240
LFPNISTHFG VEEFYTAPPA TLGTEANRLE YICNAQFVNS STVAIDQGRE QLFDNTQHVD  300
WIHELGYNAA GIWKVFIDID TGLHGETGAY TAIGLGIADF LCIPLHLDMS DWYGVQVLLN  360
DVEILHDLDV CHAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9012e-94A0A167V901_PICAB; Transcription factor MYB30
TrEMBLA0A1W2KRF43e-94A0A1W2KRF4_PINRA; MYB transcription factor MYB6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-55myb domain protein 3