PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030242-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRF
Protein Properties Length: 789aa    MW: 84872.9 Da    PI: 9.1852
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030242-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.9e-25285329145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e 
  PSME_00030242-RA 285 DPEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVEG 329
                       79****************************************986 PP
2QLQ59.21.2e-20217251337
               QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       FT +Q+q+L++Q+l++Ky++a++PvPpeLl +i+k
  PSME_00030242-RA 217 FTQSQWQELEHQALIFKYMLAGVPVPPELLIPIRK 251
                       9********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-12215251IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.749216251IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.3E-16217250IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.054285329IPR014977WRC domain
PfamPF088796.1E-21286328IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDFGHGDGSF GAGERSMANL LNELGGEHRQ RNNSNNNNGG GGGGGGGGVL SMSPANNNNH  60
SNPLKPCRSV SEMDLSKSRD GDDHHSREVQ GPMKLPRTDS FPFDLKNHHH HHQFQLQLQQ  120
QQNQQQQLGR SNSMVSDGRL GYSPTNSSVS DPVSVLYAGD STAAARTAHA SLLQPFYPFK  180
TAGLPALSMG RETASHMGMG MGMHGGGGVL QGSRICFTQS QWQELEHQAL IFKYMLAGVP  240
VPPELLIPIR KSVGEMAGLP AGPGSHHPNM NSWGSFHLRF ANNTDPEPGR CRRTDGKKWR  300
CSRDVAPDQK YCERHMHRGR PRSRKPVEGG QTAINTSSSN NNNTTAQSLV GGPSSSSPAT  360
NNAASSMIGL AAGRSSTSSL TSLRPSISIN NTQQNHNQSN SALMGIKPFS SSGTGGGLIS  420
INGVPGSQFK PPLHMVTPVS SMPPNKDYRY MNWMKGEIDE HILFSEANPG NNNTRALGHQ  480
DSHSMNNLAM FSSVNNAWRL MPSKLADTKI NTNTNTNSLL QFNSPQLRTI GQDFSLVPEM  540
NLHQSQHHHQ QQQQEQQQQQ QQQQHSFLSN GFGVVESVRD QSSGGQPLRH FFDDWPRSRD  600
PWSDMEAEQR SNPTNSSTTQ LSISIPMTSS DFAGTNSNSP RGKVSLSSLK LSMSMARGAE  660
DDPTQMGLGV GMGLGPMNEE RHRQNNWVPV SWQSTMGGPL AEVLQSTTNA GNVAVTSRGC  720
KTPGGLNLMT EGWDLSPHGS PRMASPTGVL QKTLASLSDS SGGSSPRAVA AAAAAKHDQT  780
ALQQNLGGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7110510.0KJ711051.1 Pinus tabuliformis clone PtGRF1 GRF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7A00.0A0A0K0M7A0_PINTB; GRF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-42growth-regulating factor 2