PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029789-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 348aa    MW: 38369.3 Da    PI: 9.9322
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029789-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.98.4e-2165128164
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                       +W  +e+++ i++r e+e+++ ++k++k+lWe +s++m+e+gf+rs+kqCk+kw+n  +ryk++
  PSME_00029789-RA  65 QWGFKETKEFIAIRAELEKDFTQTKRNKTLWELISSRMKEKGFRRSSKQCKCKWKNFVNRYKAC 128
                       69************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.66E-3064126No hitNo description
PfamPF138379.0E-1665128No hitNo description
PROSITE profilePS500906.96966122IPR017877Myb-like domain
SuperFamilySSF477946.08E-7124167IPR010995DNA repair Rad51/transcription factor NusA, alpha-helical
Gene3DG3DSA:1.10.150.205.3E-12125166No hitNo description
PfamPF084231.5E-60166346IPR013632DNA recombination and repair protein Rad51, C-terminal
SuperFamilySSF525404.09E-24166346IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd011235.46E-61166346No hitNo description
Gene3DG3DSA:3.40.50.3006.0E-43167346IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5016213.75172315IPR020588DNA recombination and repair protein RecA-like, ATP-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMMGGGGEVE GMGLGVMAAL PLQLTPTVAI SSGNHLGGSN NSSLLTNSGG GGLNNNLKKD  60
DMIPQWGFKE TKEFIAIRAE LEKDFTQTKR NKTLWELISS RMKEKGFRRS SKQCKCKWKN  120
FVNRYKACGI SVVDIKKLKD VGHCMVEAVA YSPKKKLVQI KGLSDAKLPL DQGGGQGKAL  180
YIDAEGTFRP QRLLQIAERY EELFTFGFER LNSQTFNILR SCRFGLNGVD VLENVAYAKA  240
YNTDHQSRLL LEAASMMAET RFALMIVDSA TSLYRTDFVG RGELSAWQMH LAKFLRSIQK  300
MADEFGVEVV VTNQVVAQVD GSTMFAGPQV KPIGGNIIAH ASTTRFGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n0w_A3e-7616734649204DNA repair protein RAD51 homolog 1
5np7_C3e-75167346145300DNA repair protein RAD51 homolog 1
5np7_D3e-75167346145300DNA repair protein RAD51 homolog 1
5np7_E3e-75167346145300DNA repair protein RAD51 homolog 1
5np7_F3e-75167346145300DNA repair protein RAD51 homolog 1
5np7_G3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_A3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_B3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_C3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_D3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_E3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_F3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_G3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_H3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_I3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_J3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_K3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_L3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_M3e-75167346145300DNA repair protein RAD51 homolog 1
5nwl_N3e-75167346145300DNA repair protein RAD51 homolog 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA (By similarity). Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination. {ECO:0000250, ECO:0000269|PubMed:10330467, ECO:0000269|PubMed:12897254}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1185881e-165BT118588.1 Picea glauca clone GQ04008_A03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447907.11e-102PREDICTED: DNA repair protein RAD51 homolog isoform X4
SwissprotQ9XED74e-92R51A2_MAIZE; DNA repair protein RAD51 homolog B
TrEMBLA0A1U8JN726e-98A0A1U8JN72_GOSHI; DNA repair protein RAD51 homolog isoform X3
STRINGLus100399282e-99(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.14e-25Trihelix family protein
Publications ? help Back to Top
  1. Franklin AE, et al.
    Three-dimensional microscopy of the Rad51 recombination protein during meiotic prophase.
    Plant Cell, 1999. 11(5): p. 809-24
    [PMID:10330467]
  2. Franklin AE,Golubovskaya IN,Bass HW,Cande WZ
    Improper chromosome synapsis is associated with elongated RAD51 structures in the maize desynaptic2 mutant.
    Chromosoma, 2003. 112(1): p. 17-25
    [PMID:12811575]
  3. Pawlowski WP,Golubovskaya IN,Cande WZ
    Altered nuclear distribution of recombination protein RAD51 in maize mutants suggests the involvement of RAD51 in meiotic homology recognition.
    Plant Cell, 2003. 15(8): p. 1807-16
    [PMID:12897254]