PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029422-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 255aa    MW: 28597.1 Da    PI: 8.2568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029422-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1364115255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +r+++++Er+RR+++++ f++Lr+llP  +     +K s ++ ++ Av+Y+ sLq
  PSME_00029422-RA  64 KRNAKMIERQRRREMKTLFSTLRSLLPDeN---LRGKRSVSDQVQAAVNYVLSLQ 115
                       6889************************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1461127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1062119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-1162119No hitNo description
PROSITE profilePS5088812.65962114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-1064115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-768120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDFPSGLYST STSPADVPQG FDERNPATPT GFHDLLSHPS SMATIFNSSV QSKNRLTGAG  60
PSEKRNAKMI ERQRRREMKT LFSTLRSLLP DENLRGKRSV SDQVQAAVNY VLSLQQKVED  120
LTTERDIKMK AKAHSERNEN VSLDGVQFSS NEKTGKSQLF RGSDRDQFPA VEIKSVGSGV  180
QVSTKTFEHQ ILYCHLLQAL EEAGLEVLSA TCLAIKTNRV FHSIHTKVHD LNAFDIETLY  240
QKLWHLISNG YNQDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16474RNAKMIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH53e-59B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.14e-23bHLH family protein