PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028925-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 393aa    MW: 42703 Da    PI: 8.855
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028925-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.53.9e-1489174286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++  +l+Li+a  e+  +l+rg+lk+++W+ev++++       +  ++ +qCk++++ l+k+yk ++    ++     +++p+f +++
  PSME_00028925-RA  89 WSQTATLTLIDAWGERYLELNRGNLKQKHWKEVADAVngrpGINKQDKTDVQCKNRLDTLKKKYKVERSKIFSG---GATKWPLFPKMD 174
                       *************************************84443334467999**************999998886...5568*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-2488176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDESNNARRH HLHGGGGGAA EVVAGGNTGG GGGGAANGLS LSLPQPLTRP SSVKPSASPP  60
PPPPPPLHPA GEPAGGDRIA AAGGRDDIWS QTATLTLIDA WGERYLELNR GNLKQKHWKE  120
VADAVNGRPG INKQDKTDVQ CKNRLDTLKK KYKVERSKIF SGGATKWPLF PKMDELIGPA  180
RKHHHHHPQQ LPLPPPPSLR PRRHPIESSP NPLNTATSPD MTESCLNGFN GNPSSAKRQK  240
TEAAENPDNN PLKELAGAIL KFGEVYERIE VVKHQQMMDL EKHRMEFAKD LELQRMHLFV  300
QTQLELAKIK HAKHGNTGSI SPSPDFGCSC FTVTYPLGFE PGSSFEQSII SKYSVSRNPF  360
HQQPILDNSG ETNSAQAWSF CSSCNCSFKS SGD
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8647280.0EU864728.1 Pseudotsuga menziesii isolate 22-2 locus CN638556.1 transcription regulation protein gene, partial cds.
GenBankEU8647360.0EU864736.1 Pseudotsuga menziesii isolate 26-3 locus CN638556.1 transcription regulation protein gene, partial cds.
GenBankEU8647400.0EU864740.1 Pseudotsuga menziesii isolate 28-3 locus CN638556.1 transcription regulation protein gene, partial cds.
GenBankEU8647420.0EU864742.1 Pseudotsuga menziesii isolate 30-1 locus CN638556.1 transcription regulation protein gene, partial cds.
GenBankEU8647450.0EU864745.1 Pseudotsuga menziesii isolate 30-4 locus CN638556.1 transcription regulation protein gene, partial cds.
GenBankEU8647470.0EU864747.1 Pseudotsuga menziesii isolate 32-2 locus CN638556.1 transcription regulation protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531829.19e-74trihelix transcription factor ASIL2-like
SwissprotQ9LJG85e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA9NWZ61e-146A9NWZ6_PICSI; Uncharacterized protein
STRINGEFJ278848e-74(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.25e-47sequence-specific DNA binding transcription factors