PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028751-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 573aa MW: 61794.9 Da PI: 5.0222

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028751-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.6	1.3e-08	297	317	35	55
G2-like 35 lmkvkgLtlehvkSHLQkYRl 55 lm+v+gLt+e+v+ HLQkYRl PSME_00028751-RA 297 LMNVEGLTRENVAIHLQKYRL 317 8*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04305	1.6E-20	7	89	IPR007402	Protein of unknown function DUF455
CDD	cd00657	3.52E-4	29	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-8	296	322	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MSPQEVIEHV WRREIPSAKN SPLPHNACIL HNLAHIELNA IDLAWDTIVI FSTFNEILGS 60 QFFLDFAHVA DDGSRHFSWC LQRLGELGFS LQVIPPGMDF SNVIVQDENT NNDSTQLLES 120 PLWGEVFIVV MKIEPGQLNV DAQNSFLLYG VPGMLCLCSA VQTSSEFVKS TSDREDDEKG 180 HVFKSLTSTG IIPKSTRSLA DQIDGICTHK ASSDHLPCNI DMDSDKSTSD REDDEKGSAA 240 YLISDKIQPL VKLSRALSSL LGHEMRDTMR MQSCIIFSGR NRNKQNENRQ EIIHAMLMNV 300 EGLTRENVAI HLQKYRLYLK RLSGVVSQQG SMGNAFGGGR ESSFGSLCQV DGIGDLQVLA 360 QSGHLSAHPL ESLQAGVLGR LNGSVGLGLP GLNSSGMLQF SSLPGLGCNN SIGRAQGIAP 420 INNPMNAFPC LSAGLELDQL QEKQQIARLG DIGAPVDDPA GFRMMQRQLI ATNSSPIGLG 480 GGSSGNISVH STNNALVLQL MQQQQQKYGR GLTTLTTLTS GGAELGACSA DSSLVHSSKS 540 PEIVALEKLS ESIEALLSLA DVDCSDAKIV VQD

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MSPQEVIEHV WRREIPSAKN SPLPHNACIL HNLAHIELNA IDLAWDTIVI FSTFNEILGS  60
QFFLDFAHVA DDGSRHFSWC LQRLGELGFS LQVIPPGMDF SNVIVQDENT NNDSTQLLES  120
PLWGEVFIVV MKIEPGQLNV DAQNSFLLYG VPGMLCLCSA VQTSSEFVKS TSDREDDEKG  180
HVFKSLTSTG IIPKSTRSLA DQIDGICTHK ASSDHLPCNI DMDSDKSTSD REDDEKGSAA  240
YLISDKIQPL VKLSRALSSL LGHEMRDTMR MQSCIIFSGR NRNKQNENRQ EIIHAMLMNV  300
EGLTRENVAI HLQKYRLYLK RLSGVVSQQG SMGNAFGGGR ESSFGSLCQV DGIGDLQVLA  360
QSGHLSAHPL ESLQAGVLGR LNGSVGLGLP GLNSSGMLQF SSLPGLGCNN SIGRAQGIAP  420
INNPMNAFPC LSAGLELDQL QEKQQIARLG DIGAPVDDPA GFRMMQRQLI ATNSSPIGLG  480
GGSSGNISVH STNNALVLQL MQQQQQKYGR GLTTLTTLTS GGAELGACSA DSSLVHSSKS  540
PEIVALEKLS ESIEALLSLA DVDCSDAKIV VQD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF678600	2e-82	EF678600.1 Picea sitchensis clone WS02929_C23 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	4e-22	response regulator 1