PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028555-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 387aa    MW: 43939.8 Da    PI: 7.688
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028555-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.52.9e-45321573128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                       pGfrFhPt++elv +yLk+ v+gk +++ ++i+ +d+y+++PwdLp+ +  +e+e++fF++rd+++++   r+nr+t sgyWkatg+d+ v +
  PSME_00028555-RA  32 PGFRFHPTEQELVGFYLKRMVQGKLHNF-NFIRMLDLYRYDPWDLPSFACLGERELFFFVPRDERSQNnRGRPNRITPSGYWKATGSDRFVRE 123
                       9***********************9888.99***************65556899********998886377********************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +g+ +glkktLvfy+grap+g+ktdW+m+eyrl
  PSME_00028555-RA 124 DNGKCIGLKKTLVFYRGRAPRGQKTDWIMNEYRL 157
                       ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.6930176IPR003441NAC domain
SuperFamilySSF1019412.62E-5130176IPR003441NAC domain
PfamPF023653.2E-2432157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
FSVQPHHRKL IHMKMGMNVG QRGISQNPIE LPGFRFHPTE QELVGFYLKR MVQGKLHNFN  60
FIRMLDLYRY DPWDLPSFAC LGERELFFFV PRDERSQNNR GRPNRITPSG YWKATGSDRF  120
VREDNGKCIG LKKTLVFYRG RAPRGQKTDW IMNEYRLLDY TDKPKKEVVL CRIYRKATPL  180
KLIEQKAMSQ AEVTSTCEDL DSISQDSQLS PAKIAHNNRA QEAKSICIRD SDSVACNEIT  240
TEPSSSAQDN VTKSDLTSSL GRAFKSDLNN LMESTVYGGF VEPIFQAFAD ESKKIEGFSS  300
LMAMLNASPA SGSVENCWDR LLLSAKAEEP ESVQIPKLSM DFRNEEAANR NFQNPWTDLW  360
SPSSIICTPH LCQNSSLDCL GNGHDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-433217819167NO APICAL MERISTEM PROTEIN
1ut4_B2e-433217819167NO APICAL MERISTEM PROTEIN
1ut7_A2e-433217819167NO APICAL MERISTEM PROTEIN
1ut7_B2e-433217819167NO APICAL MERISTEM PROTEIN
4dul_A2e-433217819167NAC domain-containing protein 19
4dul_B2e-433217819167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028553434.11e-69NAC domain-containing protein 22-like
TrEMBLA9NVV71e-175A9NVV7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-68NAC domain containing protein 36