PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027653-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 484aa    MW: 54112.6 Da    PI: 6.4574
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027653-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87.3e-56311591129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelv++yL+kk+ +++++  ++i+e+d++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd+e++
  PSME_00027653-RA  31 LPPGFRFHPTDEELVTYYLTKKILDSSFSG-RAIAEADLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATDAGYWKTTGKDREIF 122
                       79*************************999.89***************99999**************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle
  PSME_00027653-RA 123 NSrSSALVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 159
                       9856778****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-6424183IPR003441NAC domain
PROSITE profilePS5100561.40331183IPR003441NAC domain
PfamPF023651.1E-2832158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MIIELGMEST TLNPMNNAHE AEDEAEEHSQ LPPGFRFHPT DEELVTYYLT KKILDSSFSG  60
RAIAEADLNK CEPWDLPGKA KMGEKEWYFF SLRDRKYPTG LRTNRATDAG YWKTTGKDRE  120
IFNSRSSALV GMKKTLVFYK GRAPKGEKTN WVMHEYRLEG KFSYHRLPKN CKDEWVVCRI  180
FQKSAGGKKT SIGLLSRNTY LDLPGSPSLP SLLESPYNTT ALNDQETGSI ESESGTNSAK  240
AHVSCFSTAM EYPRTNFTGH HLHQYQRGNS SNYPDSSDQL SEMARLMKQP SYMHNFMLND  300
PRIQMNMMPA AALFSLSNMR RDQISAMLDQ QPAGIQQLPV LPSPMLYNPH MPLPSNSSNM  360
GYPTDINISA ALHSSKALVS QSAGNSMEPS SSSGVHHKTL SNDNTMGANN SVGSFQWTND  420
GLSQKILGQS IQEADGAQCL STDMNDEMTS VVCNRLDRPL DQLDSSAAPP VDFDSLWNIR  480
EHLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53171891171NO APICAL MERISTEM PROTEIN
1ut4_B3e-53171891171NO APICAL MERISTEM PROTEIN
1ut7_A3e-53171891171NO APICAL MERISTEM PROTEIN
1ut7_B3e-53171891171NO APICAL MERISTEM PROTEIN
3swm_A3e-533118920174NAC domain-containing protein 19
3swm_B3e-533118920174NAC domain-containing protein 19
3swm_C3e-533118920174NAC domain-containing protein 19
3swm_D3e-533118920174NAC domain-containing protein 19
3swp_A3e-533118920174NAC domain-containing protein 19
3swp_B3e-533118920174NAC domain-containing protein 19
3swp_C3e-533118920174NAC domain-containing protein 19
3swp_D3e-533118920174NAC domain-containing protein 19
4dul_A3e-53171891171NAC domain-containing protein 19
4dul_B3e-53171891171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260303.11e-106PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A482EV390.0A0A482EV39_9SPER; NAC4 domain protein
STRINGXP_010260303.11e-105(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.12e-95NAC family protein