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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00027152-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | NAC | ||||||||
| Protein Properties | Length: 208aa MW: 23903.3 Da PI: 5.1786 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 57.2 | 5.9e-18 | 21 | 100 | 28 | 109 |
NAM 28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
+l+++i+++d+y+++Pw+Lp ++ +e++w+fF++r +++ r+nr+t sgyWkatg+d++v ++ k Lv+
PSME_00027152-RA 21 QSLHRIIPTLDLYRYDPWELPDLANVGERQWFFFVPRYHTK--FARPNRMTVSGYWKATGSDRAVRNELLLSASKKMELVLC 100
456678***************8788899********98765..57********************99654455555566665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51005 | 18.858 | 1 | 134 | IPR003441 | NAC domain |
| SuperFamily | SSF101941 | 1.16E-18 | 21 | 105 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 208 aa Download sequence Send to blast |
MKVSDSIPRK RSCWASISRK QSLHRIIPTL DLYRYDPWEL PDLANVGERQ WFFFVPRYHT 60 KFARPNRMTV SGYWKATGSD RAVRNELLLS ASKKMELVLC RIYRKAVTQK SMEQLVKHDD 120 LEREKPVVTE MSIEQGFADE DDKEEPVISG DEGKSDSILD TVICRSNPLT DANVFPLHLG 180 IGQTEDEASI FDDLIPIICC EEIIQIPS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-15 | 25 | 86 | 47 | 110 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-15 | 25 | 86 | 47 | 110 | NAC domain-containing protein 19 |
| 4dul_B | 1e-15 | 25 | 86 | 47 | 110 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A075M5N5 | 1e-30 | A0A075M5N5_9SPER; NAC domain protein | ||||
| STRING | Pavir.Db00028.1.p | 4e-25 | (Panicum virgatum) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G17040.1 | 6e-23 | NAC domain containing protein 36 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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