PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026978-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 302aa    MW: 33772.2 Da    PI: 9.8951
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026978-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.61.9e-1447136186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +Li+   e+  +l+rg+lk+++W+evs+++      ++++++ +qCk++++ l+k+yk +k++ +  +    s+++++ +l+
  PSME_00026978-RA  47 CWSEGATNTLIDSWGERYLNLNRGNLKQKHWREVSDAVnarsGGHKLRKTDVQCKNRLDTLKKKYKLEKARISTSALIGPSKWSFYAKLD 136
                       7*************************************9987788899***********************99998888899*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2445138No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEDGDRTHNV VGHHHHHPEG LTLGLPASNV PAALAATGGG GGSREDCWSE GATNTLIDSW  60
GERYLNLNRG NLKQKHWREV SDAVNARSGG HKLRKTDVQC KNRLDTLKKK YKLEKARIST  120
SALIGPSKWS FYAKLDNLIG PSRSKHLALK HFHPHPHLQL QPQPQPLPPP LPPPLPSKRP  180
DGGFNSVSSG SLDATESLPS DGPNEKGKRA RRSSSSSESP MRELAQAIMK FGEVYERIEK  240
EKQQQMMELE KHRMEFTRDL EVQRMQLFMQ TQIEVAKMEH AKHGGTEWPL EFGMTSNRDI  300
GA
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264262.12e-77PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8ABR85e-76A0A1U8ABR8_NELNU; trihelix transcription factor ASIL2-like
STRINGXP_010264262.18e-77(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.23e-42sequence-specific DNA binding transcription factors