PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026822-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family VOZ
Protein Properties Length: 469aa    MW: 52262.9 Da    PI: 6.9241
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026822-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ375.12.1e-1152284351216
               VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 
                       ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna 
  PSME_00026822-RA 228 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 320
                       89******************************************************************************************* PP

               VOZ  94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186
                       elfd+ +lege++rewlffdkprr fesgnr        +grgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle
  PSME_00026822-RA 321 ELFDMYVLEGESMREWLFFDKPRRDFESGNR--------NGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 405
                       ******************************9........7***************************************************** PP

               VOZ 187 lklvdekksakgkvskdsladlqkklgrlt 216
                       lk+v +kk++kgkv  d+ +dlq++lg+l+
  PSME_00026822-RA 406 LKMVCSKKNTKGKVGGDPPVDLQHQLGKLS 435
                       ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3309.4E-982135IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MFRSDVPISK VPFSVVPVFA TGIHFPTFGS VPMGYETESF TSTGSLSGSL YIDRRRIEVL  60
KSPILYVDSR PGLLFEYDNP KTVQKPRAAA VLTEEGGLVV KNYIAVLEAV EGEAEKEYWA  120
KLREGQDKRR QFAGNSRGRG GRHSSNNRNS FTKGNGTGKE NKHRRFEEDD GSTKDERPNK  180
VQKLGNDGEL QASEASKDYI PAAQPIFTLN GEEETSPVFN GPQPGLCPPP AAFLGPKCAL  240
WDCSRPAQGT KWCQDYCSDF HMTLASNEGA PGMRPVLRPG GIDLKDGPLF AALSAKTQEK  300
AVGIPECEGA ATAKSPWNAY ELFDMYVLEG ESMREWLFFD KPRRDFESGN RNGRGWHESR  360
KQVIKDFGGL KRSYYMDPQP STQFEWHLYE YEINDCDACA LYRLELKMVC SKKNTKGKVG  420
GDPPVDLQHQ LGKLSVEFSW FLLHLAVSGV VNTLKQKQEF QGAPSDLSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1187292e-88BT118729.1 Picea glauca clone GQ04009_K15 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-117vascular plant one zinc finger protein