PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00026687-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 343aa MW: 38157.1 Da PI: 4.6191

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00026687-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.9e-09	4	25	23	45
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W++Ia++++ gRt++++k++w+ PSME_00026687-RA 4 SWSKIAAHLP-GRTDNEIKNYWN 25 5*******.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.415	1	32	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-7	3	33	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-11	4	28	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-7	4	26	IPR001005	SANT/Myb domain
CDD	cd00167	2.25E-6	5	25	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MISSWSKIAA HLPGRTDNEI KNYWNSSIKK KFRLKHDRPS STIAAANSKS YIPFQSNHIC 60 IEFDNICNAN SARAHVLDIV TSSQRNLEVM LEGYHPAINA FNAVTTGDNQ LFVPVVQTHD 120 QNEEPLIYRE PTNNQLISYS QLWNNANSSH LQSQQNYKAA KPSACDELVI ESYRTTVPPH 180 EDPAFANNYS MGSTEISIPA LVETLKDEIG KMEQINQNEI MNDYSLFTAS SGESSWGADH 240 SYSNIPAAFT DTYPGVSYTT HGHELLGIRI LEDHVSYQLP YIEVGGEEFG DQLGSSIIVN 300 EQENSKPITA IFGGGTGQAT VWDDMYNINT TAAPDFFNQI SFS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MISSWSKIAA HLPGRTDNEI KNYWNSSIKK KFRLKHDRPS STIAAANSKS YIPFQSNHIC  60
IEFDNICNAN SARAHVLDIV TSSQRNLEVM LEGYHPAINA FNAVTTGDNQ LFVPVVQTHD  120
QNEEPLIYRE PTNNQLISYS QLWNNANSSH LQSQQNYKAA KPSACDELVI ESYRTTVPPH  180
EDPAFANNYS MGSTEISIPA LVETLKDEIG KMEQINQNEI MNDYSLFTAS SGESSWGADH  240
SYSNIPAAFT DTYPGVSYTT HGHELLGIRI LEDHVSYQLP YIEVGGEEFG DQLGSSIIVN  300
EQENSKPITA IFGGGTGQAT VWDDMYNINT TAAPDFFNQI SFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	2e-11	myb domain protein 20