PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026574-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 24125.3 Da PI: 10.3768 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.8e-11 | 27 | 70 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++eEd ++ + G++ W+ Ia+ ++ Rt++++k++w++ PSME_00026574-RA 27 GGFSEEEDNIICSIYNNIGSR-WSIIAAQLP-ARTDNDIKNYWNTT 70 569******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.437 | 1 | 20 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.32E-21 | 6 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-12 | 6 | 32 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.613 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-9 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 27 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.28E-7 | 29 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 33 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
LNTGLKRCGK SCRLRWLNYL RPNIKHGGFS EEEDNIICSI YNNIGSRWSI IAAQLPARTD 60 NDIKNYWNTT LKKKLSRKGK DRQARHLAAA KQQNHEDLQS YNTSELNRSP NIYGPQQQPV 120 GVVHHMNIDC MNGPYSNFGN GISSEPATFQ LNHQEVFDQE VSDRNGRASS HAPFVKRSKT 180 KKGRVAAEKV KRRLIGCSIL NLLFFLYGQQ VP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-19 | 7 | 75 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 181 | KRSKTKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024183451.1 | 3e-45 | transcription factor RAX3-like | ||||
Refseq | XP_027348497.1 | 2e-45 | transcription factor RAX3-like | ||||
TrEMBL | D5ABB6 | 2e-66 | D5ABB6_PICSI; Uncharacterized protein | ||||
STRING | EOY31764 | 1e-44 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-44 | myb domain protein 84 |