PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026511-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 14767.1 Da PI: 9.3014 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 63.4 | 5.6e-20 | 76 | 122 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+ rr+C+++C++apyfp+++++++a+vhk+FGa+nvlk+l+ PSME_00026511-RA 76 PCAACKMRRRRCTEKCPFAPYFPQSHAESYAAVHKIFGANNVLKMLQ 122 7********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.992 | 75 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-19 | 76 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MKGCSEIAHR LYHLSKHDLT HRLFSTRIDK ANFHDISAGC TQYLKLASLQ DINTISRTEM 60 QSHYTQDEEK VKLISPCAAC KMRRRRCTEK CPFAPYFPQS HAESYAAVHK IFGANNVLKM 120 LQVHVIIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-14 | 75 | 121 | 10 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-14 | 75 | 121 | 10 | 56 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-18 | LOB domain-containing protein 13 |