PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026452-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 416aa    MW: 46699.7 Da    PI: 7.4805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026452-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-1685132148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd llv ++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00026452-RA  85 KGPWTPEEDRLLVTYIQKNGHGSWRALPELAGLLRCGKSCRLRWTNYL 132
                       79******************************99************97 PP
2Myb_DNA-binding45.12.3e-14138181146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+eE   +++++  lG++ W++Ia+ ++ gRt++q+k++w +
  PSME_00026452-RA 138 RGSFTEEEGRTIIQLHGILGNR-WSAIASQLP-GRTDNQIKNFWST 181
                       89********************.*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2376135IPR009057Homeodomain-like
PROSITE profilePS5129417.00480132IPR017930Myb domain
SuperFamilySSF466893.59E-3082179IPR009057Homeodomain-like
SMARTSM007171.7E-1384134IPR001005SANT/Myb domain
PfamPF002492.1E-1585132IPR001005SANT/Myb domain
CDDcd001676.57E-1087132No hitNo description
PROSITE profilePS5129424.712133187IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-25136187IPR009057Homeodomain-like
SMARTSM007172.9E-14137185IPR001005SANT/Myb domain
PfamPF002495.8E-13138181IPR001005SANT/Myb domain
CDDcd001673.28E-9140179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDATMEKGGL GALAKFIWEK IVAECNRAPF HNTLAGSLAR DRRKTKAVKV KKDFEILSIG  60
RDFMPKKRRS KMGRAPCSEK KGLKKGPWTP EEDRLLVTYI QKNGHGSWRA LPELAGLLRC  120
GKSCRLRWTN YLRPDIKRGS FTEEEGRTII QLHGILGNRW SAIASQLPGR TDNQIKNFWS  180
TRLKKRLLKM GLDPATHAPL REANPTADPE GLEALALTRH KAQWENARLE AEARLSRESL  240
LMSSSDSAAG YHTNNTAGDN PPTDYFLKLW NSEAGKAFMN KETRHPNRGG DNSEIPVISS  300
VSFMMCCAST QNSCDQSLNP NDKEKHNRSQ QCGDCNVKTG GVLPCFAEMA MGEIEDETNE  360
ELDLLELLLD FPDNDDNNNI QSELITAFQQ NPSSPWPELH GEDFWSNLSF IDHDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28831875108B-MYB
1h8a_C5e-288318725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16471PKKRRSKM
26570KKRRSK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022859765.12e-97transcription factor MYB41-like
SwissprotQ9M2D91e-93MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM71e-108A0A222UAM7_GINBI; R2R3MYB15
STRINGVIT_15s0046g03190.t015e-96(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-82myb domain protein 17