PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026279-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 272aa MW: 30196.8 Da PI: 4.1065 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 142.6 | 2.8e-44 | 184 | 272 | 1 | 89 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 ppp aflgpkcalwdc+rp+qgs+w+qdycs+fh + alneg+pg+ pvlrp+gidlkdgllfaal +k+ k gipecegaat+ksp PSME_00026279-RA 184 PPPEAFLGPKCALWDCPRPTQGSDWCQDYCSNFHGMAALNEGPPGMGPVLRPGGIDLKDGLLFAALGSKTMVKYFGIPECEGAATKKSP 272 89**************************************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MFIDLQQVRK ESQVNDTLVL EEQVHQLPRE CKAELHEESL TTSMLEASLC SSDFSCDMWC 60 LLQLHEEEDD ATSILVAPYN SKLQLNENTL ETADPSSFQE AIPPNEMRKD FYVEHANAEA 120 QNIDGTSSPE NIHTESLLQT TDESFEVATQ MNQDFDHNLC LYLDPKVEEE HIPKFQGPCP 180 GISPPPEAFL GPKCALWDCP RPTQGSDWCQ DYCSNFHGMA ALNEGPPGMG PVLRPGGIDL 240 KDGLLFAALG SKTMVKYFGI PECEGAATKK SP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439796.1 | 2e-75 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_021907726.1 | 5e-76 | transcription factor VOZ1 | ||||
Refseq | XP_022142196.1 | 2e-75 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 2e-65 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1S3B082 | 4e-74 | A0A1S3B082_CUCME; transcription factor VOZ1 | ||||
STRING | XP_008439796.1 | 6e-75 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 7e-68 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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