PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026136-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 366aa    MW: 40895 Da    PI: 6.3493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026136-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rgrWT+eEde+l ++++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00026136-RA 14 RGRWTAEEDEILTKYIQSHGEGSWRSLPQNAGLLRCGKSCRLRWINYL 61
                      8*******************************99************97 PP
2Myb_DNA-binding52.31.4e-1672112648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +eE+el+++++++lG++ W++Ia +m+ gRt++++k++w+++l
  PSME_00026136-RA  72 KEEEELIIRLHALLGNR-WSLIAGRMP-GRTDNEIKNYWNTHL 112
                       7****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21563IPR009057Homeodomain-like
PROSITE profilePS5129415.977961IPR017930Myb domain
SuperFamilySSF466893.19E-2811108IPR009057Homeodomain-like
SMARTSM007178.8E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
CDDcd001678.54E-101661No hitNo description
PROSITE profilePS5129424.71962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2464116IPR009057Homeodomain-like
SMARTSM007175.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1472112IPR001005SANT/Myb domain
CDDcd001677.10E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPCCSKV GLNRGRWTAE EDEILTKYIQ SHGEGSWRSL PQNAGLLRCG KSCRLRWINY  60
LRSDVKRGNI CKEEEELIIR LHALLGNRWS LIAGRMPGRT DNEIKNYWNT HLSRKLANRE  120
IEPATHKSLG GLAEIFTQSK PLSIISNVKN TSQNDMKQAL CSNIEASMVS SIHSVLLKKM  180
SKKSSKKRSV WKKKQVPIEE HIASGQSSSC ESSCSGNLSS TDLLKAACCN NIPPLSCEEV  240
KNLSFEETAC HEDRSTGHVL LKEIKKEDCN ADDHVNSSKL WEESFNILSE DMENTIFGYL  300
DTEQELFGCL VDPLILATNV DQSNMETETL SSADAEYNST DHDDLWSTFL SNSEKNTLLS  360
PSSSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9291e-175A0A167V929_PICAB; Transcription factor MYB34
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-70myb domain protein 12