PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025745-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 519aa    MW: 58360 Da    PI: 6.7026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025745-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000632951123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k+F +   L  H+r H
  PSME_00025745-RA 29 YFCKICSKRFVSGRALGGHMRAH 51
                      78*******************98 PP
2zf-C2H213.40.00023296318123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ykC+ C+k+F+++  L  H  +H
  PSME_00025745-RA 296 YKCTTCNKVFPSHQALGGHRASH 318
                       9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-72851No hitNo description
PROSITE profilePS501579.9932952IPR007087Zinc finger, C2H2
PfamPF139125.2E-82951IPR007087Zinc finger, C2H2
SMARTSM003550.0272951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-7291318No hitNo description
PfamPF139121.0E-10295320IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741296323IPR007087Zinc finger, C2H2
SMARTSM003550.0078296318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
PfamPF139121.6E-12393417IPR007087Zinc finger, C2H2
SMARTSM003550.3394416IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280396416IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MTMVDIMYFR SQAMEVFKKQ EEGEHPLTYF CKICSKRFVS GRALGGHMRA HASAFIAADT  60
LAETEFQKSK RPRASDHKSM EEKEEGLDSN GSNLMYALRK NPKRSWLFAD PDYSFMLGHG  120
LGSKPIDSSI NGDLCGKEFS SCKGHSETHQ DSSDAHLEES QEHETQDEKE ESENDAEIEI  180
DHPSRNSSRF AKWRKGKRSK RARYAIQLIN QHEQFCSETN NEEEDMAMFL VMLASGVNTA  240
QNPQYQVVTE EPGSGNLKLP NAGSQLTKCI RKKPKYKKIH GDAGIYDDNG VKKSRYKCTT  300
CNKVFPSHQA LGGHRASHNK VKASFLQIQE ENESLEEDIT DDELITGSDS QLPRNFYRPC  360
TKERRTKESC VKSRDETRTI EPASFSGKKT LRVHECSICH MVFPSGQALG GHKRCHWVSA  420
GASDNVSTIS SNKESPLQQQ QMPARMELLD LNLPAPVDDD SDAGNLNNLC DNAVDSYGDS  480
YAQIHSYPKQ GLLLYKNHND LCKYDEADSK VGKEIGFGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-143A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-21C2H2-like zinc finger protein