PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025744-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 537aa    MW: 60035.8 Da    PI: 6.7632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025744-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000662850123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k+F +   L  H+r H
  PSME_00025744-RA 28 YFCKICSKRFVSGRALGGHMRAH 50
                      78*******************98 PP
2zf-C2H214.10.00013132150321
                       ETTTTEEESSHHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                       C  Cgk Fs++ +L  H++
  PSME_00025744-RA 132 CDLCGKEFSSWKSLFGHMK 150
                       ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0272850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0142855IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-82850No hitNo description
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
PfamPF139129.6E-83050IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-8125152No hitNo description
SMARTSM003550.003130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596130157IPR007087Zinc finger, C2H2
PfamPF139122.0E-7131154IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SMARTSM003550.13304326IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201304331IPR007087Zinc finger, C2H2
PfamPF139129.5E-8304328IPR007087Zinc finger, C2H2
SuperFamilySSF576679.13E-7304326No hitNo description
PROSITE patternPS000280306326IPR007087Zinc finger, C2H2
SuperFamilySSF576679.13E-7382409No hitNo description
PfamPF139127.8E-11386411IPR007087Zinc finger, C2H2
SMARTSM003550.74387409IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787387409IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MTTMDILYSS SQVMGVLKKQ EKKHALNYFC KICSKRFVSG RALGGHMRAH APASIAADTL  60
TETEFQKSKR PRASDHKSME EKDEEGLDSN GSNLMYALRK NPKRSWRFAD RDYSFLLGHD  120
FDSKSIDSSI NCDLCGKEFS SWKSLFGHMK CHSDTHQDSS DAHLEESWQH ETQDDETEES  180
ESDAEIEIAH PREKSSRFHK WKKGKRSRRP RHAIQRINPS EQFGSETINE VEDMAICLVM  240
LANGVSTVQK PLVQVGAEEP GSVDLKLPNI GSQLSKCMRK KLRYKKIDGD AVLYADDGVK  300
KAGYKCITCN KVFHSHQALG GHRTSHNKIK GSFLQTEEEN ESPEEEITDE ELISGSDSYQ  360
EPRSKEGTKN SCVKLDSLSG KKSLRVHECS ICHRVFYSGQ ALGGHKRGHW SSAGASDTLS  420
TISSNKDSSI QQQQMPARVE LLNLNLPAPV DDDFDAGNFN KLGGNAVDFD GASYDQTHSL  480
PSLQPWSMGS YQKQGLLLYS NHTDLSKYDE ADSKVGKEFG FGRGCDSEFP ASVQPWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-149A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-22C2H2-like zinc finger protein