PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025528-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 384aa    MW: 43660.4 Da    PI: 6.9092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025528-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.13.9e-45321573128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                       pGfrFhPt++elv +yLk+ v+gk +++ ++i+ +d+y+++PwdLp+ +  +e+e++fF++rd+++++   r+nr t sgyWkatg+d+ v +
  PSME_00025528-RA  32 PGFRFHPTEQELVGFYLKRMVQGKLHNF-NFIRMLDLYRYDPWDLPSFACLGERELFFFVPRDERSQNnRGRPNRLTPSGYWKATGSDRFVRE 123
                       9***********************9888.99***************65556899********998886377********************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +g+ +glkktLvfy+grap+g+ktdW+m+eyrl
  PSME_00025528-RA 124 DNGKCIGLKKTLVFYRGRAPRGQKTDWIMNEYRL 157
                       ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5130176IPR003441NAC domain
PROSITE profilePS5100550.61830176IPR003441NAC domain
PfamPF023653.3E-2432157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
FSVQPHHRKF IHMKMGMNVG QPGISQTPIE LPGFRFHPTE QELVGFYLKR MVQGKLHNFN  60
FIRMLDLYRY DPWDLPSFAC LGERELFFFV PRDERSQNNR GRPNRLTPSG YWKATGSDRF  120
VREDNGKCIG LKKTLVFYRG RAPRGQKTDW IMNEYRLPDY TDKIKKEVVL CRIYRKATPL  180
KLIEQKAMSQ AEVTSTCEDL DSISQDSQLS PTKIAHNNRA EEAKSICIRD SDSVSCNEIT  240
TEPSSSSQDN VTRSDMTSSL GCAVNSDLNN LMESTVYGGF VEPIFQAFAD ESKKIEGFSS  300
LMAMLNVYPS SGSVENCWDR LLQAKEPESV QIPKLSMDFR NEEAANPNFQ NPWTDLWSPS  360
SIICTPHFCQ NSSLDCLGNG HGGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-423217819167NO APICAL MERISTEM PROTEIN
1ut4_B2e-423217819167NO APICAL MERISTEM PROTEIN
1ut7_A2e-423217819167NO APICAL MERISTEM PROTEIN
1ut7_B2e-423217819167NO APICAL MERISTEM PROTEIN
4dul_A2e-423217819167NAC domain-containing protein 19
4dul_B2e-423217819167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028553434.12e-70NAC domain-containing protein 22-like
TrEMBLA9NVV71e-171A9NVV7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-69NAC domain containing protein 36