PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00024629-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

TCP

Protein Properties

Length: 383aa MW: 42825.3 Da PI: 9.2197

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00024629-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.5	2.1e-25	5	86	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................s 66 +k+++++++hTkv+gR+ Rv ++ +aa +F L + G+++d++ti+WLl++ kpai e+tgt + PSME_00024629-RA 5 VKRSSTKDRHTKVNGRGQRVKIPTATAAWIFHLMRGFGHKSDGETIQWLLNKVKPAIMEATGTcvvptlplpivgsgtstvP 86 6999***********************************************************7777777776665543220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.7E-19	9	69	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.321	10	64	IPR017887	Transcription factor TCP subgroup
SuperFamily	SSF47576	1.07E-5	334	376	IPR001715	Calponin homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MRLVVKRSST KDRHTKVNGR GQRVKIPTAT AAWIFHLMRG FGHKSDGETI QWLLNKVKPA 60 IMEATGTCVV PTLPLPIVGS GTSTVPALPM SILGSGTGHV SSNPSKLQQH PQAPPSAHGV 120 LLKALTEDVA YVEWVLIQVV KCTWNLCKRD MATFDIGSCS HKYDRAEIDM RAPFESVKDV 180 VSLFAERVVG DKITEKRPRI PEEKAHQLRN GMYVFGWLEQ YKDKQPTMSS TAVSYTGGDI 240 KNFGDMKYLG KNSPNVDNWF SSSAEKGTGL GGGWKLAWQW QKSDESNMSG WLFILKEEGS 300 PLSLCFVNPC AISRNKYAFL KNATTTLLHT IGEFEKVAFV THINSYIIDD PVMKRYLPID 360 PMTNYLSDIM KDGILLWYEY SIN

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MRLVVKRSST KDRHTKVNGR GQRVKIPTAT AAWIFHLMRG FGHKSDGETI QWLLNKVKPA  60
IMEATGTCVV PTLPLPIVGS GTSTVPALPM SILGSGTGHV SSNPSKLQQH PQAPPSAHGV  120
LLKALTEDVA YVEWVLIQVV KCTWNLCKRD MATFDIGSCS HKYDRAEIDM RAPFESVKDV  180
VSLFAERVVG DKITEKRPRI PEEKAHQLRN GMYVFGWLEQ YKDKQPTMSS TAVSYTGGDI  240
KNFGDMKYLG KNSPNVDNWF SSSAEKGTGL GGGWKLAWQW QKSDESNMSG WLFILKEEGS  300
PLSLCFVNPC AISRNKYAFL KNATTTLLHT IGEFEKVAFV THINSYIIDD PVMKRYLPID  360
PMTNYLSDIM KDGILLWYEY SIN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	9e-25	TCP family protein