PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00023520-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27782.6 Da PI: 8.6555 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 3.9e-30 | 142 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYG K k+ ++prsYYrC+ ++C+vkkkver+a+dp ++ +tYeg+Hnhe PSME_00023520-RA 142 VEDGYKWRKYGTKLLKNRPHPRSYYRCSESNCNVKKKVEREASDPGLLLTTYEGTHNHE 200 58********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.3E-31 | 128 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 135 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.692 | 137 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-32 | 142 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MENLKNPDNF YRSLDSNPQY VDRSLDPINS LFCYTPIAAN HNNAIVSQEL PHIYPQDVPE 60 PKIWKDAAWI HDIVRIPSKE VDAVEATACK GPAPQSFPSL EEQPYGKGEI INGESSKKRK 120 KIRKAEKEPI CIFKTSSETN MVEDGYKWRK YGTKLLKNRP HPRSYYRCSE SNCNVKKKVE 180 REASDPGLLL TTYEGTHNHE SHSVIYYIRS PIILPQPPGL KPAIVLVNVG GVSSEAGIKF 240 ATQQAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-24 | 133 | 200 | 8 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 6e-24 | 133 | 200 | 8 | 75 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 120 | KKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D6RB88 | 5e-46 | A0A0D6RB88_ARACU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-28 | WRKY DNA-binding protein 50 |