PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00022880-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C3H | ||||||||
Protein Properties | Length: 186aa MW: 21207.9 Da PI: 5.0814 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 118 | 137 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+ +tG C++G+rC++aH PSME_00022880-RA 118 CPFHIKTGACRFGARCSRAH 137 ******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.483 | 112 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 5.1E-12 | 118 | 137 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 5.1E-12 | 137 | 157 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
AFFSNNVLFS DDFLQAEQAA QKEEEENWEY VEDGPAEIIW QGNEIIVQKK RIRVPKRKSD 60 EKTRVEDSDQ PISNPLPPQH AAFADYQKVT SSTTGLKVFD GIEQQIPNFG TEQDKAHCPF 120 HIKTGACRFG ARCSRAHFYP DKSCTILMKS MYNGPGLTWE QDEGLEVCHI HVCMCLLLYP 180 VASFNF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021659306.1 | 8e-75 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q9SY74 | 3e-59 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A0B0MVT4 | 2e-70 | A0A0B0MVT4_GOSAR; Uncharacterized protein | ||||
STRING | ERM99729 | 6e-68 | (Amborella trichopoda) | ||||
STRING | Gorai.005G120000.1 | 2e-70 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 5e-61 | C3H family protein |
Publications ? help Back to Top | |||
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