PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022470-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 457aa    MW: 51213.9 Da    PI: 8.4073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022470-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-131461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l ++++ +G g W+  + + g++R++k+c++rw++yl
  PSME_00022470-RA 14 RGAWTKTEDIILSEYIRIHGDGGWRNLPIKAGLKRCGKSCRLRWLNYL 61
                      89********************************************97 PP
2Myb_DNA-binding47.63.7e-1567110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg  ++ E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  PSME_00022470-RA  67 RGDISPAEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                       677799****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.962961IPR017930Myb domain
SuperFamilySSF466895.47E-2612108IPR009057Homeodomain-like
SMARTSM007173.7E-101363IPR001005SANT/Myb domain
PfamPF002492.7E-121461IPR001005SANT/Myb domain
CDDcd001672.96E-71661No hitNo description
PROSITE profilePS5129425.65162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2465116IPR009057Homeodomain-like
SMARTSM007176.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1367110IPR001005SANT/Myb domain
CDDcd001677.16E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTKT EDIILSEYIR IHGDGGWRNL PIKAGLKRCG KSCRLRWLNY  60
LRPDIKRGDI SPAEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLSKKLLLSM  120
NKCQSKNRKT MIKTESKSSR VQNRVFKTTA VKVTTAVRLY ETVRPNSTIN GYGCTNRSSD  180
EAVKETTANT SKSWGDLLGN DTELRVSTCS MSALARSPQS DYFGADAATL AESLLDLNEL  240
SSPDRSLLSP PSNYSTDFGL QDFCREQAAM AGEGNEFEVM SSDHGIEELY DHTQHLDWIN  300
ELDYIEKSSP QSLSLLLSES QEEREEINTS KLGLGKDIRW VGLRESSNKR FGSCHGTQCL  360
RSVAFVLGKT LLDADKTSGP SFTGFICLGL HVTRGKTEKE TLSQVSRREG GACNNLKLPT  420
QALPAILFFE LSFMYGFEAK PFQPAMGLRD QYDDRFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9111e-180A0A167V911_PICAB; Transcription factor MYB31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-51myb domain protein 3