PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00022202-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HSF | ||||||||
Protein Properties | Length: 219aa MW: 25538.1 Da PI: 7.7634 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 89.7 | 3.7e-28 | 15 | 97 | 2 | 93 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d+++++++sws ++nsf+v++++ef +L++yFkhsnf+SFvR+Ln+YgF+k++ e+ weF+++ F + + ++ PSME_00022202-RA 15 FLTKTYDMVDDPATNTMVSWSPSSNSFIVWNPTEFFGVLLSTYFKHSNFSSFVRKLNTYGFHKIDPER---------WEFTNEGFLRVHSHS 97 9********************999*****************************************999.........888888887665543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-33 | 6 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.11E-28 | 10 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.9E-42 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.6E-25 | 15 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-18 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-18 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-18 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEGSQNDSSN GPPPFLTKTY DMVDDPATNT MVSWSPSSNS FIVWNPTEFF GVLLSTYFKH 60 SNFSSFVRKL NTYGFHKIDP ERWEFTNEGF LRVHSHSQQL QKGESLSRGA CVEIKQLEYE 120 TEKLRQEKQG LVIELVRLKQ HQQDTEFDLQ SLEEQLQVME QRQHRMMAFL AKANPNFVAQ 180 LVQHHDKIAH IATKTRKEDC KIMMRSWRLG KMDVLVAKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-18 | 13 | 92 | 18 | 108 | Heat shock factor protein 1 |
5d5u_B | 3e-18 | 8 | 92 | 19 | 117 | Heat shock factor protein 1 |
5d5v_B | 3e-18 | 8 | 92 | 19 | 117 | Heat shock factor protein 1 |
5d5v_D | 3e-18 | 8 | 92 | 19 | 117 | Heat shock factor protein 1 |
5hdg_A | 2e-18 | 13 | 92 | 8 | 98 | Heat shock factor protein 1 |
5hdn_A | 2e-18 | 13 | 92 | 8 | 98 | Heat shock factor protein 1 |
5hdn_B | 2e-18 | 13 | 92 | 8 | 98 | Heat shock factor protein 1 |
5hdn_C | 2e-18 | 13 | 92 | 8 | 98 | Heat shock factor protein 1 |
5hdn_D | 2e-18 | 13 | 92 | 8 | 98 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117589 | 1e-137 | BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276853.1 | 1e-72 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_010276854.1 | 1e-72 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_010276855.1 | 1e-72 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_010276856.1 | 1e-72 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_010276857.1 | 1e-72 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_010276858.1 | 1e-72 | PREDICTED: heat shock factor protein HSF8 | ||||
Swissprot | Q84T61 | 4e-63 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A200PXG0 | 3e-72 | A0A200PXG0_9MAGN; Heat shock factor (HSF)-type | ||||
STRING | XP_010276853.1 | 5e-72 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 6e-64 | heat shock factor 1 |
Publications ? help Back to Top | |||
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