PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00021858-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 728aa MW: 78554.1 Da PI: 9.7593

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00021858-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.2	8e-17	291	381	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ v +L++a+++++ +r+klk+++We+v++++ ++ +++++qCk+k+e+++kry++++++ ++ ++ + s++p++++l+ PSME_00021858-RA 291 EWSEGAVTTLLDAYESKWLLRNRAKLKGNDWEDVARHVstraNGTKSTKTQTQCKNKIESMKKRYRAEAATLNGSnSNANGSSWPLYSRLD 381 5***********************************99544455589***************99877764789999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-20	289	381	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MVMAKGRGRG SGSPNHAGRS VTDLHHTPLN TTQQHCFGII SNRAEEQADR VPPAGATDSR 60 KGSWPRISHR IRAEGSRRGS YLPTVLVIRQ RFLGQTGVGD EFCHLTGSGS GWSKEARNID 120 PPIENGAQCS QLDGTGRAGL AELGYSLRRG RRCYPGDCSA RFFLSPCLVL VLVLVLLLRR 180 RPRCCAFLIS HPPPRLSSYK LAKAPPSPPR LCSDCVQVRS HGEEDAYRKE VLTLPANGKG 240 SGSSWGTMGK LDSLEKPLQR PGGSSNNNNN NNANGDVLTL SKTPERVKRD EWSEGAVTTL 300 LDAYESKWLL RNRAKLKGND WEDVARHVST RANGTKSTKT QTQCKNKIES MKKRYRAEAA 360 TLNGSNSNAN GSSWPLYSRL DGLLRCRTAA AAAGDANPIP CANAIGNPPP DLALLESPTP 420 PPPPPPLPPP PPVEEREGQA EGQGQGQGQG QGQGHGQGQE QGQGQAQAQK QEEVDLVRVA 480 PAAQDSNQAD DGSNTLPNRK ESAALDTDTS TPRSKIAHAP CDGSGKGVAN NYSSKRRKSS 540 GGGGGGGGSS EVAESIRSFA DSIVKLEQAK MRLYKDSERL RAETEVRRGE MELKRTEIIA 600 KTQLQIARLL SGKNGKRKLT DRNTITNTSS TTLALTTAPL PPDAAAHAPP PRSLLGKFSE 660 WIDLDSCGLG FIWRLSPKSH LDSYRVASEV QIQVKELTVH PLLEFLGADQ NFYRQCLGSC 720 TIVERQNG

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MVMAKGRGRG SGSPNHAGRS VTDLHHTPLN TTQQHCFGII SNRAEEQADR VPPAGATDSR  60
KGSWPRISHR IRAEGSRRGS YLPTVLVIRQ RFLGQTGVGD EFCHLTGSGS GWSKEARNID  120
PPIENGAQCS QLDGTGRAGL AELGYSLRRG RRCYPGDCSA RFFLSPCLVL VLVLVLLLRR  180
RPRCCAFLIS HPPPRLSSYK LAKAPPSPPR LCSDCVQVRS HGEEDAYRKE VLTLPANGKG  240
SGSSWGTMGK LDSLEKPLQR PGGSSNNNNN NNANGDVLTL SKTPERVKRD EWSEGAVTTL  300
LDAYESKWLL RNRAKLKGND WEDVARHVST RANGTKSTKT QTQCKNKIES MKKRYRAEAA  360
TLNGSNSNAN GSSWPLYSRL DGLLRCRTAA AAAGDANPIP CANAIGNPPP DLALLESPTP  420
PPPPPPLPPP PPVEEREGQA EGQGQGQGQG QGQGHGQGQE QGQGQAQAQK QEEVDLVRVA  480
PAAQDSNQAD DGSNTLPNRK ESAALDTDTS TPRSKIAHAP CDGSGKGVAN NYSSKRRKSS  540
GGGGGGGGSS EVAESIRSFA DSIVKLEQAK MRLYKDSERL RAETEVRRGE MELKRTEIIA  600
KTQLQIARLL SGKNGKRKLT DRNTITNTSS TTLALTTAPL PPDAAAHAPP PRSLLGKFSE  660
WIDLDSCGLG FIWRLSPKSH LDSYRVASEV QIQVKELTVH PLLEFLGADQ NFYRQCLGSC  720
TIVERQNG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104494	4e-69	BT104494.1 Picea glauca clone GQ02811_B02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9SB35	1e-110	A0A0C9SB35_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_928_1942 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-42	sequence-specific DNA binding transcription factors