PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021690-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 166aa    MW: 18461.8 Da    PI: 6.8999
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021690-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171666148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+++++ +G g+W+t +r+      gR ++++k++w+++l
  PSME_00021690-RA 16 KGPWTPEEDLRLIKYIEAHGEGNWRTLPRKAAgriPGRIDNEVKNYWNTHL 66
                      79****************************999***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21773IPR009057Homeodomain-like
PROSITE profilePS5129419.6571170IPR017930Myb domain
SuperFamilySSF466892.23E-151272IPR009057Homeodomain-like
SMARTSM007173.6E-131568IPR001005SANT/Myb domain
PfamPF002495.1E-141666IPR001005SANT/Myb domain
CDDcd001671.00E-121866No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGREHTPCCS YVGLSKGPWT PEEDLRLIKY IEAHGEGNWR TLPRKAAGRI PGRIDNEVKN  60
YWNTHLRKKV NTTKGLLPNS QSLCKQPSSF DEICEGGTGT LNVNEMEPSF APCEDAEITR  120
HTEEDQNKGS SCSQIGEIVF LGEQKNSMTA VRMLPVTQNP LKTGSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022733842.17e-24myb-related protein 308-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.14e-22myb domain protein 107