PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00021609-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 445aa MW: 49396.5 Da PI: 8.4445

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00021609-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.3	1.7e-17	65	121	1	57
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenl 57 +W +e+++ i++r ++e+++ ++k++k+lWe +s +m+e+gf+rs+kqCk+kw+nl PSME_00021609-RA 65 QWGFKETKEFIAIRDDLEKDFTQTKRNKTLWELISLRMKEKGFRRSSKQCKCKWKNL 121 69******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.249	58	122	IPR017877	Myb-like domain
CDD	cd12203	1.03E-25	64	121	No hit	No description
Pfam	PF13837	4.9E-13	65	121	No hit	No description
SuperFamily	SSF47794	7.53E-5	223	264	IPR010995	DNA repair Rad51/transcription factor NusA, alpha-helical
Gene3D	G3DSA:1.10.150.20	1.0E-7	231	263	No hit	No description
Pfam	PF08423	5.4E-11	263	298	IPR013632	DNA recombination and repair protein Rad51, C-terminal
SuperFamily	SSF52540	1.88E-27	263	443	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd01123	2.38E-61	263	443	No hit	No description
Gene3D	G3DSA:3.40.50.300	3.8E-46	264	443	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50162	18.33	269	412	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain
Pfam	PF08423	3.7E-53	319	443	IPR013632	DNA recombination and repair protein Rad51, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0008094	Molecular Function	DNA-dependent ATPase activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MMMGSGGEVE GMGLGVMAAL PLQLTPTVAI SSGNQLGGSN NNSLLTNNGG GGLNNNLKKD 60 DRIPQWGFKE TKEFIAIRDD LEKDFTQTKR NKTLWELISL RMKEKGFRRS SKQCKCKWKN 120 LGIGNGMLPF GHASSESTSI SGVHINIDLA ENIAECLFKL DPNNVAPYVM LSNIYVVVGK 180 WDHVQKLRKM MKDGRIEKTP GNIPMEQQQL KQQQIPQEEE NAEELQHGPY PVEQLQDARN 240 CTVEAIAYSP KKELVQIKGL SDAKLPLDQG GGEGKALYID AEGTFRPQRL LQIAKRYEEL 300 FIFGFERLNS QTFNILRSCR FGLNGADVLE NVSYARAYNT DHQSRLLLEA ASMMAETRFA 360 LMIVDSATSL YRTDFVGRGE LSARQMHLAK FLRSLQKMAD EFDVAVVVTN QVVAQVDGST 420 MFAGPQVKPI GGNIIAHAST TRFGK

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MMMGSGGEVE GMGLGVMAAL PLQLTPTVAI SSGNQLGGSN NNSLLTNNGG GGLNNNLKKD  60
DRIPQWGFKE TKEFIAIRDD LEKDFTQTKR NKTLWELISL RMKEKGFRRS SKQCKCKWKN  120
LGIGNGMLPF GHASSESTSI SGVHINIDLA ENIAECLFKL DPNNVAPYVM LSNIYVVVGK  180
WDHVQKLRKM MKDGRIEKTP GNIPMEQQQL KQQQIPQEEE NAEELQHGPY PVEQLQDARN  240
CTVEAIAYSP KKELVQIKGL SDAKLPLDQG GGEGKALYID AEGTFRPQRL LQIAKRYEEL  300
FIFGFERLNS QTFNILRSCR FGLNGADVLE NVSYARAYNT DHQSRLLLEA ASMMAETRFA  360
LMIVDSATSL YRTDFVGRGE LSARQMHLAK FLRSLQKMAD EFDVAVVVTN QVVAQVDGST  420
MFAGPQVKPI GGNIIAHAST TRFGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n0w_A	4e-76	263	443	48	204	DNA repair protein RAD51 homolog 1
5np7_C	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5np7_D	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5np7_E	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5np7_F	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5np7_G	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_A	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_B	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_C	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_D	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_E	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_F	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_G	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_H	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_I	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_J	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_K	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_L	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_M	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
5nwl_N	4e-75	264	443	145	300	DNA repair protein RAD51 homolog 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118588	1e-172	BT118588.1 Picea glauca clone GQ04008_A03 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10039928	1e-101	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	3e-20	Trihelix family protein