PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00021445-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31881.8 Da PI: 6.5131 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G g W+ I+ + g++R++++c++rw++yl PSME_00021445-RA 14 RGAWTKEEDIILSEYIRIHGDGlGWTNIPPKTGLKRSGNSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.7e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++ E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00021445-RA 68 RGNISPGEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113 7889999***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.592 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.98E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.077 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRSPCCSTE GLRRGAWTKE EDIILSEYIR IHGDGLGWTN IPPKTGLKRS GNSCRLRWLN 60 YLRPGIKRGN ISPGEEELII RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN THLGKKVLSM 120 NEPDPNSRTQ KLERIRSQSP SPVQNHVIKT IPVKITMAAR HSEMVRPVDF NSYGCSNYIS 180 SEHETFKTPE RIVEEEGRNS TGSKSSLENQ ESGPHFDHFE GDTATLDESL FDLNELSSPQ 240 WNVLFSPSVS STDLGFEEFC RVVAAEMIEF EDMMCSNQSN I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-21 | 12 | 117 | 5 | 108 | B-MYB |
1h8a_C | 6e-21 | 12 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116752 | 1e-102 | BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence. | |||
GenBank | KU131219 | 1e-102 | KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458423.1 | 1e-65 | transcription factor MYB8 | ||||
Swissprot | Q9S9K9 | 6e-58 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V901 | 1e-103 | A0A167V901_PICAB; Transcription factor MYB30 | ||||
STRING | XP_009361685.1 | 2e-64 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 8e-52 | myb domain protein 3 |