PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00021358-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 265aa MW: 30333.2 Da PI: 6.2521 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.1e-14 | 22 | 64 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ + +E+el+++++ +lG++ W++Ia ++ gRt++++k++w+ PSME_00021358-RA 22 RGNISRDEEELIIRLHSLLGNR-WSLIAGRLT-GRTDNEIKNYWN 64 788999****************.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.333 | 1 | 16 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 2 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.74E-19 | 3 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.335 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-13 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-12 | 22 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-9 | 26 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 29 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
IKRCGKSCRM RWLNYLRPDI KRGNISRDEE ELIIRLHSLL GNRWSLIAGR LTGRTDNEIK 60 NYWNIHMSKK LGLLMNRCQP KTSQNHSTIS KPSARVQNRV FKATASKITK PLEFFETLRP 120 NGYNGDLCTD RRSDEAFKFC NIEETTKSSL RDLLLNDSIG IEVSEHIGFA MVDNLVETGA 180 TVSTSVSTLV DQKSPHSDCL AGDAATLEES LLYLNDQLSP VCNQLHSPSE CSTDFASEDF 240 YSEMEEPYDR AQNLDWIFEF YYLQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-17 | 3 | 71 | 40 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY166641 | 4e-39 | AY166641.1 Picea mariana transcription factor MYB7 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 5e-96 | B8LMJ6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 8e-38 | MYB family protein |