PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021152-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 533aa    MW: 58853.1 Da    PI: 6.5944
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021152-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.6e-32306360155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k r+rWtp++He+F+e v+qLGGs++AtPk il+lm+v+gLt++hvkSHLQkYR+
  PSME_00021152-RA 306 KSRMRWTPDIHENFLESVNQLGGSDRATPKGILKLMNVEGLTIYHVKSHLQKYRM 360
                       68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-29305361IPR009057Homeodomain-like
SuperFamilySSF466893.58E-17305360IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-24306360IPR006447Myb domain, plants
PfamPF002491.5E-6308359IPR001005SANT/Myb domain
PfamPF143799.1E-22391437IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
NAELGFIDGN AGIISKVDLS RRSLDRGLDG VAMRTSTSGL SSQAFSSGLS QNPNFIRKVP  60
SCPMPPILSS RCPKVPNLEL VSLEKEMNCN PMGINLVSSV SGCLFPEKRF SASLSSCAGL  120
PYTCPVISQQ HNQLDSQQNQ LGSHSFVHHA PKISSPASLM QSSRLGCLQP AFYGNSRKQI  180
NQESWSGYPS QDVLNISANA SQCSQRNLNV ASNGMVTEDL HAKQNDWHAW EEQLVCYNDS  240
LAPSWTEHLM DENIQDPELK EIYHAPKPAT TDCVVHEIHG QQHYTALSET QMGASSAVSE  300
TGVTHKSRMR WTPDIHENFL ESVNQLGGSD RATPKGILKL MNVEGLTIYH VKSHLQKYRM  360
ARHIPDTVRG SSGKARNSAD IFPSLDMKTG IQMTEALRLQ MEVQKQLHEQ LEVQRNLQLR  420
IEEQGRCLQK MFEERQKAGC LVTTSQPSSG DPSCQSSETI ISSPNLEAAK GKSESETPSI  480
SELVDGYDSQ MLRDLNVSNF GEAEKPYCKS TPVSEGIESP PMKRVRHMNN LDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-27306363259Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1191300.0BT119130.1 Picea glauca clone GQ04101_L07 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.33e-65G2-like family protein