PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020870-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 556aa MW: 62864.9 Da PI: 7.9333

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020870-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.6e-20	13	68	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e Le+++++++yps++++ +L+++lgLte+qV+ WF+ rR k+k+ PSME_00020870-RA 13 KKRRLKTPQQVEGLESFYAEHKYPSEAMKSQLSEELGLTEKQVQGWFCHRRLKDKR 68 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.811	9	69	IPR001356	Homeobox domain
SMART	SM00389	3.1E-20	11	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.19E-18	11	77	IPR009057	Homeodomain-like
CDD	cd00086	7.19E-17	13	68	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-19	13	68	IPR009057	Homeodomain-like
Pfam	PF00046	2.6E-17	13	68	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MDSEEDKISP ENKKRRLKTP QQVEGLESFY AEHKYPSEAM KSQLSEELGL TEKQVQGWFC 60 HRRLKDKRLM KEEACNNGKQ DPQNGIMQDS VNGVKQDSSG SGKKTDNQRH LKCKEVENQR 120 FVNAIDYPAA VLASELRDHD LFKVNHENME DTFAGSSSAS QERSSLQSGN PYETEARRRP 180 FQNGKHYDFE GKRKNRSSYM NPYSEENDEH EAIAAVREQL GDEYREDGPP LSVEFHPLPP 240 GAWDDSTEPH YQGNIVVQDH QRMPKKMTEQ DARKMFRSEA FHTTCSSGVG SGYLSIPAGL 300 KYERASPKFE RASPKYEWAS YSKHEPLTSK STWRPANNHL QISDNYHVPD LNSSMQLDED 360 SPDESPSSGF VTKSYPAWHK QEAAGRLSSD AHLPLPYGSK NGTIPGKVLN AGKEFSVSRP 420 YNAGDIYHDA SGVNPNVKAA APLVQNRDLM SSQGEDKSQP KKMTKRERLR EERKIKKEQD 480 SALRLKQKLI PKEEKMIAQV ERKKQMEENR KPREVAKCQA ATEKVAISKN LMKGHTGEIP 540 SNFSGVGLVA ACSSME

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MDSEEDKISP ENKKRRLKTP QQVEGLESFY AEHKYPSEAM KSQLSEELGL TEKQVQGWFC  60
HRRLKDKRLM KEEACNNGKQ DPQNGIMQDS VNGVKQDSSG SGKKTDNQRH LKCKEVENQR  120
FVNAIDYPAA VLASELRDHD LFKVNHENME DTFAGSSSAS QERSSLQSGN PYETEARRRP  180
FQNGKHYDFE GKRKNRSSYM NPYSEENDEH EAIAAVREQL GDEYREDGPP LSVEFHPLPP  240
GAWDDSTEPH YQGNIVVQDH QRMPKKMTEQ DARKMFRSEA FHTTCSSGVG SGYLSIPAGL  300
KYERASPKFE RASPKYEWAS YSKHEPLTSK STWRPANNHL QISDNYHVPD LNSSMQLDED  360
SPDESPSSGF VTKSYPAWHK QEAAGRLSSD AHLPLPYGSK NGTIPGKVLN AGKEFSVSRP  420
YNAGDIYHDA SGVNPNVKAA APLVQNRDLM SSQGEDKSQP KKMTKRERLR EERKIKKEQD  480
SALRLKQKLI PKEEKMIAQV ERKKQMEENR KPREVAKCQA ATEKVAISKN LMKGHTGEIP  540
SNFSGVGLVA ACSSME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	KKRRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111759	0.0	BT111759.1 Picea glauca clone GQ03303_E03 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S8U3	0.0	A0A0C9S8U3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3612_2671 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	7e-35	HB-other family protein