PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020810-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 540aa MW: 60200.6 Da PI: 8.1387

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020810-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	105.3	7.4e-33	471	540	1	70
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakv 70 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+p ++p+lrp+gidlk g+lfaals+k+ PSME_00020810-RA 471 PPPAAFLGPKCALWDCSRPAQGTKWFQDYCSDFHMTLASNEGAPRMRPILRPGGIDLKYGPLFAALSTKT 540 89*****************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	6.8E-19	333	414	IPR012677	Nucleotide-binding alpha-beta plait domain
Pfam	PF08777	8.5E-13	334	412	IPR014886	La protein, RNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003723	Molecular Function	RNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MQGPQLGLRS MTKDESKGDQ HCRNIKGGKD KGELYRLHAL VHALAALTFM RDVIIPVIVP 60 FSATALVLKD LILVRSKENI EKTLRHDLGN EPGMKNPIKL DIISTAKDES EGNQRCKKIK 120 GGKDKEGAKR EKLSFEKAVI EAIPEEVERN MLLPSPRSTR SFWFLVRIFF ETIHILFYYN 180 ILSKGRKTTS TSIQGVLRSY SIGLSVGSSK DSEEVSLSDD FFDEDKDESG GVGGGAPTRW 240 LEKGGYSRGC YHTAGQSSAY SSSFLLRRVH TDSSRGFFLT IKSQEEEGEQ YQIGRVFKSF 300 REMAGEKPKT GNVWNIVKPF VNGGASSMLA TCVIQPVDMI KYVDYHMGAE SGYVHFEQPE 360 MVQKPRAAAV LAEEGGLVVK NYIAVLEAVE GEAEKEYWAK LREGQDKRQQ FAGNSRGRVT 420 FWLCDFLVDD FHTPEKDFER DYIPAAKPIF SLTGKEETSP VFNGPQPGLC PPPAAFLGPK 480 CALWDCSRPA QGTKWFQDYC SDFHMTLASN EGAPRMRPIL RPGGIDLKYG PLFAALSTKT

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MQGPQLGLRS MTKDESKGDQ HCRNIKGGKD KGELYRLHAL VHALAALTFM RDVIIPVIVP  60
FSATALVLKD LILVRSKENI EKTLRHDLGN EPGMKNPIKL DIISTAKDES EGNQRCKKIK  120
GGKDKEGAKR EKLSFEKAVI EAIPEEVERN MLLPSPRSTR SFWFLVRIFF ETIHILFYYN  180
ILSKGRKTTS TSIQGVLRSY SIGLSVGSSK DSEEVSLSDD FFDEDKDESG GVGGGAPTRW  240
LEKGGYSRGC YHTAGQSSAY SSSFLLRRVH TDSSRGFFLT IKSQEEEGEQ YQIGRVFKSF  300
REMAGEKPKT GNVWNIVKPF VNGGASSMLA TCVIQPVDMI KYVDYHMGAE SGYVHFEQPE  360
MVQKPRAAAV LAEEGGLVVK NYIAVLEAVE GEAEKEYWAK LREGQDKRQQ FAGNSRGRVT  420
FWLCDFLVDD FHTPEKDFER DYIPAAKPIF SLTGKEETSP VFNGPQPGLC PPPAAFLGPK  480
CALWDCSRPA QGTKWFQDYC SDFHMTLASN EGAPRMRPIL RPGGIDLKYG PLFAALSTKT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118729	5e-83	BT118729.1 Picea glauca clone GQ04009_K15 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-31	vascular plant one zinc finger protein