PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020648-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 340aa    MW: 37915.5 Da    PI: 6.4369
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020648-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.2e-071381611946
                       TTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  19 lGggtWktIartmgkgRtlkqcksrwqk 46 
                       +   +W+ Ia +++ gRt++++k+ w++
  PSME_00020648-RA 138 H---RWSQIATHLP-GRTDNEIKNLWNS 161
                       4...4*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.86E-5130160No hitNo description
SuperFamilySSF466893.2E-8133173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-12136180IPR009057Homeodomain-like
PROSITE profilePS500906.121139163IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTGVVAARII RHNKFNFKLN NYARDDPGFA KLPSVLLDWL HIPRRSSTLP VFQEAPAFRN  60
GKECIISAPS SWRSGYSQLQ EEEEDDPELC DSTSVHITMM LDAAYLRGLV SGILSILQHA  120
ACPKNCDYIE KNKLVTIHRW SQIATHLPGR TDNEIKNLWN SCIKKKLRQR GIDPNTDRPL  180
SEVNAEAEDN KNDGSNKKVE TQVAMDESHV SAGNEFKHLN ADTPNPKFFH VSVEDNSLFA  240
SDSQAMLHNG FMNSNNSTTT TTSTASAANI SLPKEFFLER FNSVTATPTS VEPGFNFINQ  300
TSPAQGFTAE KDHKLIDNPV LWVLQAPSRT VGFPTENLMP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1081360.0BT108136.1 Picea glauca clone GQ03117_E18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF21e-110A5JYF2_PICGL; R2R3-MYB transcription factor MYB8
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-22myb domain protein 61