PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020285-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18583 Da PI: 4.3425 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.8 | 5.9e-27 | 24 | 118 | 4 | 98 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 Ck+ +++C ++C++ +++++ +kf ++h++FGa nv+kl+++lp ++ da++s+vyeA ar++dP G++g+i++lq q++ l++++ + PSME_00020285-RA 24 QCKMEQKECLDNCTMLYRLASNDLHKFSILHQVFGACNVIKLIQDLPSDHGVDAINSMVYEASARLQDPALGCTGIIQQLQLQISDLQSQITA 116 6****************************************************************************************9988 PP DUF260 97 lk 98 ++ PSME_00020285-RA 117 TQ 118 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.191 | 20 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-26 | 24 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MQIMMRNATE KPCTQSPAAA FHEQCKMEQK ECLDNCTMLY RLASNDLHKF SILHQVFGAC 60 NVIKLIQDLP SDHGVDAINS MVYEASARLQ DPALGCTGII QQLQLQISDL QSQITATQAI 120 VQKMHSQEAE ILASCPGIRI AFNPATSTSI NDDDDDSHED LFDSNLLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-22 | 8 | 118 | 2 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-22 | 8 | 118 | 2 | 108 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087617 | 1e-101 | EF087617.1 Picea sitchensis clone WS02730_N15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 3e-65 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-23 | LOB domain-containing protein 11 |