PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020284-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22797.9 Da PI: 5.0209 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.1 | 4.8e-27 | 93 | 188 | 4 | 99 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ck+ +++C ++C++ f++++ +kfa +h++FGa nv+kl+++lp +++ da++s+v eA ar++dPv G++g+i++lq q + l+ ++++ PSME_00020284-RA 93 VCKMEQKECLDNCTMLYRFASNDLHKFASLHRVFGACNVIKLIQDLPSDQKADAINSMVCEAGARLQDPVLGCAGIIQQLQLQTSDLELQISA 185 7**************************************************************************************999998 PP DUF260 97 lke 99 ++e PSME_00020284-RA 186 TEE 188 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.296 | 89 | 190 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-26 | 93 | 186 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDLKQISVFL EVWLGAASAT LLNQGRSVWV HLPGTDGLLS SLERLRLEDA GVADPIPLNG 60 NCRSALSSRS DDMMSNANEK PGTQSPSADF HDVCKMEQKE CLDNCTMLYR FASNDLHKFA 120 SLHRVFGACN VIKLIQDLPS DQKADAINSM VCEAGARLQD PVLGCAGIIQ QLQLQTSDLE 180 LQISATEETI QKMRSQHAQL VASTRIQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-23 | 77 | 185 | 2 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-23 | 77 | 185 | 2 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960340.1 | 1e-33 | LOB domain-containing protein 1 | ||||
TrEMBL | A9P1U3 | 7e-52 | A9P1U3_PICSI; Uncharacterized protein | ||||
STRING | Si024430m | 6e-33 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-32 | LOB domain-containing protein 11 |