PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020282-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 286aa    MW: 31986.2 Da    PI: 5.3763
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020282-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.31.8e-26154248599
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ +++C ++C++   +++++ ++f ++h++FGa nv+kl+++lp +++ da++s+vyeA ar++dP  G++g i++lq q++ l++++ ++
  PSME_00020282-RA 154 CKMEQKECLDNCAILYRLASNDLHNFSILHHVFGACNVIKLIQDLPSDQKADAINSMVYEASARLQDPAFGCAGKIQQLQLQISDLQSQITAT 246
                       *****************************************************************************************9988 PP

            DUF260  98 ke 99 
                       ++
  PSME_00020282-RA 247 QA 248
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.635149250IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-25154247IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTIPSEERCA AKDNFLLCHF QPCYLLSLSE PGKGFKLLTM ASHGSSSSSG PTMEERINSL  60
ENTMGRLRAR VDKQDKLLQA TNQEGEQTWD ILNEDIRKLH VDHSASTENL EDFKEETCTS  120
FKDVANTQGD FGKLMQIMMS NATEKPSAAF HDRCKMEQKE CLDNCAILYR LASNDLHNFS  180
ILHHVFGACN VIKLIQDLPS DQKADAINSM VYEASARLQD PAFGCAGKIQ QLQLQISDLQ  240
SQITATQAVI QKIRSQQAQL LAFIPGFKIK FNPTISTSLK DADDEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2115424715108LOB family transfactor Ramosa2.1
5ly0_B5e-2115424715108LOB family transfactor Ramosa2.1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-24LOB domain-containing protein 11