PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020028-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 24928 Da PI: 8.7748 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++ +G g+W ++++ g+ R++k+c++rw++yl PSME_00020028-RA 5 KGAWTKEEDHRLIAYIRNHGEGSWCSVPKAAGLLRCGKSCRLRWNNYL 52 79******************************99*************7 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 59 | 102 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+++++Ed+l+++++ G++ W+ Iar+++ gRt+++++++w+++ PSME_00020028-RA 59 GNFSEQEDDLIIQLHSIVGNR-WSIIARRLQ-GRTDNEIRNHWNSH 102 89*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.506 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.75E-29 | 2 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.73E-11 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 27.359 | 53 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 59 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 60 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.36E-12 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGNNKGAWTK EEDHRLIAYI RNHGEGSWCS VPKAAGLLRC GKSCRLRWNN YLRPDLRHGN 60 FSEQEDDLII QLHSIVGNRW SIIARRLQGR TDNEIRNHWN SHIKKKLVKR GLDPQTHRPL 120 CSRQNSNTVR SSQPAPKCQL IPEFESSGTP YIVDFFQQDR LARSSPVPPG SSDSEDHPDL 180 NLDLCISLPC NSSNASNRVT SGLHRIVDLN SNSVSGVCID I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 5 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826645.1 | 2e-70 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-67 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NYS6 | 9e-90 | A9NYS6_PICSI; Uncharacterized protein | ||||
TrEMBL | C0JTD6 | 5e-90 | C0JTD6_PICGL; R2R3-MYB transcription factor MYB17 | ||||
STRING | ERM93882 | 8e-70 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-69 | myb domain protein 4 |